Gene detail

Detail information of GWHGAAZE032916

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011094896.1	0	PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Sesamum indicum]
COG	NP_864467.1	5E-24	serine/threonine-protein kinase pknA
Swissprot	tr\|Q9M2S4\|LRKS4_ARATH	8E-159	L-type lectin-domain containing receptor kinase S.4 (Precursor)
trEMBL	tr\|F6HL80\|F6HL80_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55567.1}
TAIR10	AT3G55550.1	6E-133	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000061	gene	76899	78778	+
GWHAAZE00000061	mRNA	76899	78778	+
GWHAAZE00000061	exon	76899	77282	+
GWHAAZE00000061	exon	77654	78778	+
GWHAAZE00000061	CDS	76899	77282	+
GWHAAZE00000061	CDS	77654	78778	+

Transcript Sequence
>GWHTAAZE032955 ATGGGTCACTCTTTTTACCCATCCCCACTTCACTTCAAGAACCCTAATTCCTCTGTTTTCTCTTTCTCCACTTGTTTTGCTTTTGTAATAGTTCCCGAATACCCCAAACTCGGTGGCCATGGCCTTGCTTTCACAATCTCCCCATCTTTGGATTTTGTCAAATCGGCTCTTCCTAGCCAGTACCTCGGACTCCTCAACGCCACCGACCTCGGAAACTTCACCAACCACCTCTTCGCCGTCGAATTTGACACCGTACAAGATTTCGAGTTCGGGGACATTAATGATAATCACGTCGGCATCGATATTAACAGTTTACACTCCAGCAAATCCTCAAAGGCGGCATATTATTCAGATGATTTGATAGAACAAGATATGAATCTCAGGAACGCTGAGGTAATTGAAGCTTGGGAGGTAGAAATTGGTCCACATAGATATTCATATAAAGAACTCAAGCAAGCGACTAAAGGTTTCAAGCAGAGTGAGCTACTTGGGTTTGGAGGATTTGGTCAAGTTTACAAAGGGACTTTACCGAATTCGAATACCCAAGTTGCTGTTAAGAGAATTTCACAAGAATCTAAACAGGGTTTGCGCGAATTTGTATCTGAAATCGCCACAATAGGCCGGCTTCGCCATAGGAATCTGGTTCAGTTATTGGGCTGGTGTCGTAAGCTTGGTGATTTGCTACTTGTATATGATTTTATGTCTAATGGAAGCTTAGACAACTTCTTGTTCGATGAGCCCAAATCGATATTGAATTGGGAACAAAGATTCAACATCATTAAAGGGGTTGCTTCCGGGCTATTGTACTTGCACGAAGGATACGAGCAAATTGTTATACATAGAGACATTAAGGCTAGTAATGTTTTACTTGATGGGGAGCTAAATGGCCGACTGGGGGACTTTGGGTTAGCAAGATTGTATGATCATGGAGAGAATCCAAGCACGACGAGAGTGGTGGGCACTTTGGGGTACTTAGCCCCAGAGCTACCAAGAACCGGGCGGGCCACTACAGGGTCTGATGTGTTTGCTTTTGGTGCTGTATTGCTTGAAGTGGTATGTGGGCGTAGACCGATTGAGCCTAAAGCATTGCCTGAAGAATTGGTTTTGGTGGATTGGGTGTGGGATAAATGGACAGAAGGGCGGTTTCTTGATGTGGTGGACCCTAAACTGAAGGGCAAGTTTGTTGAGAAGGAGGTAGCGATGGTGTTGAAGTTGGGACTTATGTGTTCAAATAATGCGCAATTGGCAAGGCCTACTATGAGGCAAGTGGTGCGGTATTTGGAGGGGGAGGTTGAGGCGCCAGAGGTTATAAGGCCGCCTTGTGGGTATGATGGAGCCAGGAAGAGTGGGGAAGACGGGTTTGATGATTATATACATTCGTATGCATCTTCTTCATTTGAGAAAACGAGTTCGTATTTGATTACTGCAACTGGGGACGTTGATGTTAGTTTTGCTTCTATATCTACCTTGCCGTTATCCCTTGTGTGTGACAAAGAGGGAGCTAGATAG

Network for GWHGAAZE032916

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	1	136	3.10E-36
PF00069.26	Pkinase	157	359	3.90E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.392
	SRR3591706	second leaf	3.879
	SRR3591707	mature leaf	4.010
	SRR3591708	Shoot apex	6.589
	SRR3591709	Stem	9.254
	SRR3591710	White floral bud	9.101
	SRR3591711	White flower	5.210
	SRR3591712	Green floral bud	4.374
	SRR3591713	Yellow flower	1.060
SRP173429	SRR8316895	Juvenile bud stage	4.822
	SRR8316896	Juvenile bud stage	3.590
	SRR8316897	Juvenile bud stage	3.078
	SRR8316894	Third green stage	2.523
	SRR8316900	Third green stage	5.238
	SRR8316901	Third green stage	5.779
	SRR8316898	Complete white stage	1.443
	SRR8316899	Complete white stage	9.920
	SRR8316903	Complete white stage	3.553
	SRR8316902	Silver flowering stage	1.225
	SRR8316904	Silver flowering stage	1.240
	SRR8316905	Silver flowering stage	0.870
	SRR8316906	Gold flowering stage	1.258
	SRR8316907	Gold flowering stage	1.353
	SRR8316908	Gold flowering stage	2.117
SRP132670	SRR6706286	Control	8.485
	SRR6706287	Light intensity 50%	8.320
	SRR6706288	Light intensity 20%	8.079
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.433
	CNS0095593	Slightly white alabastrum(diploid) 2	6.412
	CNS0095594	Slightly white alabastrum(diploid) 3	3.719
	CNS0095595	Whole white alabastrum(diploid) 2	4.901
	CNS0095596	Whole white alabastrum(diploid) 3	2.557
	CNS0095597	Whole white alabastrum(diploid) 4	3.676
	CNS0095598	Silvery flower (diploied) 1	7.114
	CNS0095599	Silvery flower (diploied) 2	6.246
	CNS0095600	Silvery flower (diploied) 3	4.963
	CNS0095601	Golden flower (diploid) 1	5.706
	CNS0095602	Golden flower (diploid) 2	5.481
	CNS0095603	Golden flower (diploid) 3	6.164
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.969
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.382
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.894
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.743
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.935
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.556
	CNS0095610	Silvery flower (tetraploid) 1	3.565
	CNS0095611	Silvery flower (tetraploid) 2	2.122
	CNS0095612	Silvery flower (tetraploid) 3	1.445
	CNS0095613	Golden flower (tetraploid) 1	1.521
	CNS0095614	Golden flower (tetraploid) 2	2.311
	CNS0095615	Golden flower (tetraploid) 3	0.336
CRA001975	CRR073297	Stem 1	3.446
	CRR073298	Stem 2	5.141
	CRR073299	Stem 3	4.151
	CRR073300	Leaf 1	7.624
	CRR073301	Leaf 2	7.152
	CRR073302	Leaf 3	4.777
	CRR073303	Juvenile bud 1	7.025
	CRR073304	Juvenile bud 2	3.871
	CRR073305	Juvenile bud 3	11.676
	CRR073306	Third green 1	1.048
	CRR073307	Third green 2	0.342
	CRR073308	Third green 3	1.155
	CRR073309	Second white 1	0.257
	CRR073310	Second white 2	0.423
	CRR073311	Second white 3	0.476
	CRR073312	Silver flowering 1	0.159
	CRR073313	Silver flowering 2	0.338
	CRR073314	Silver flowering 3	0.076
	CRR073315	Gold flowering 1	0.509
	CRR073316	Gold flowering 2	2.581
	CRR073317	Gold flowering 3	5.061
	CRR073318	Tawny withering 1	4.277
	CRR073319	Tawny withering 2	12.442
	CRR073320	Tawny withering 3	8.217