Detail information of GWHGAAZE032949


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004253099.18.0577E-141PREDICTED: uncharacterized protein LOC101267881 [Solanum lycopersicum]
trEMBLtr|K4DH65|K4DH65_SOLLC3E-141Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc12g095920.1.1}
TAIR10AT4G32960.15E-92Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000071gene3438341311-
GWHAAZE00000071mRNA3438341311-
GWHAAZE00000071exon4104241311-
GWHAAZE00000071exon3840838494-
GWHAAZE00000071exon3648336641-
GWHAAZE00000071exon3438334742-
GWHAAZE00000071CDS4104241311-
GWHAAZE00000071CDS3840838494-
GWHAAZE00000071CDS3648336641-
GWHAAZE00000071CDS3438334742-
Transcript Sequence

Network for GWHGAAZE032949

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0206


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K20776BABAM, NBA1, MERIT40 Homologous recombination map03440

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.600
SRR3591706second leaf3.884
SRR3591707mature leaf5.425
SRR3591708Shoot apex5.411
SRR3591709Stem5.442
SRR3591710White floral bud5.930
SRR3591711White flower4.614
SRR3591712Green floral bud7.747
SRR3591713Yellow flower3.670
SRP173429 SRR8316895Juvenile bud stage 10.522
SRR8316896Juvenile bud stage 14.839
SRR8316897Juvenile bud stage 5.657
SRR8316894Third green stage 6.757
SRR8316900Third green stage 19.200
SRR8316901Third green stage 18.358
SRR8316898Complete white stage 6.638
SRR8316899Complete white stage 20.521
SRR8316903Complete white stage 13.558
SRR8316902Silver flowering stage5.328
SRR8316904Silver flowering stage7.880
SRR8316905Silver flowering stage4.021
SRR8316906Gold flowering stage 10.598
SRR8316907Gold flowering stage 12.640
SRR8316908Gold flowering stage 11.196
SRP132670SRR6706286Control15.811
SRR6706287Light intensity 50%15.301
SRR6706288Light intensity 20%15.875
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.470
CNS0095593Slightly white alabastrum(diploid) 211.576
CNS0095594Slightly white alabastrum(diploid) 39.516
CNS0095595Whole white alabastrum(diploid) 27.195
CNS0095596Whole white alabastrum(diploid) 310.150
CNS0095597Whole white alabastrum(diploid) 411.501
CNS0095598Silvery flower (diploied) 19.990
CNS0095599Silvery flower (diploied) 29.852
CNS0095600Silvery flower (diploied) 314.197
CNS0095601Golden flower (diploid) 17.505
CNS0095602Golden flower (diploid) 212.104
CNS0095603Golden flower (diploid) 312.348
CNS0095604Slightly white alabastrum(tetraploid) 14.230
CNS0095605Slightly white alabastrum(tetraploid) 22.240
CNS0095606Slightly white alabastrum(tetraploid) 33.403
CNS0095607Whole white alabastrum(tetraploid) 11.757
CNS0095608Whole white alabastrum(tetraploid) 21.169
CNS0095609Whole white alabastrum(tetraploid) 34.503
CNS0095610Silvery flower (tetraploid) 11.945
CNS0095611Silvery flower (tetraploid) 23.322
CNS0095612Silvery flower (tetraploid) 32.274
CNS0095613Golden flower (tetraploid) 12.069
CNS0095614Golden flower (tetraploid) 22.762
CNS0095615Golden flower (tetraploid) 32.365
CRA001975CRR073297Stem 122.142
CRR073298Stem 221.124
CRR073299Stem 317.061
CRR073300Leaf 120.389
CRR073301Leaf 220.964
CRR073302Leaf 319.824
CRR073303Juvenile bud 122.156
CRR073304Juvenile bud 220.077
CRR073305Juvenile bud 320.934
CRR073306Third green 18.649
CRR073307Third green 29.153
CRR073308Third green 38.033
CRR073309Second white 17.814
CRR073310Second white 27.321
CRR073311Second white 35.044
CRR073312Silver flowering 14.338
CRR073313Silver flowering 25.674
CRR073314Silver flowering 35.120
CRR073315Gold flowering 18.630
CRR073316Gold flowering 212.831
CRR073317Gold flowering 310.295
CRR073318Tawny withering 117.978
CRR073319Tawny withering 215.461
CRR073320Tawny withering 320.694