Gene detail

Detail information of GWHGAAZE032950

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006355325.1	0	PREDICTED: ferrochelatase-2, chloroplastic-like [Solanum tuberosum]
COG	YP_007167757.1	4E-122	ferrochelatase
Swissprot	tr\|P42044\|HEMH_CUCSA	0	Ferrochelatase-2, chloroplastic (Precursor)
trEMBL	tr\|M0ZQ63\|M0ZQ63_SOLTU	0	Ferrochelatase {ECO:0000256\|RuleBase:RU000607}
TAIR10	AT5G26030.2	1E-151	ferrochelatase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000071	gene	91542	100767	+
GWHAAZE00000071	mRNA	91542	100767	+
GWHAAZE00000071	exon	91542	91636	+
GWHAAZE00000071	exon	93575	93860	+
GWHAAZE00000071	exon	93958	94101	+
GWHAAZE00000071	exon	94312	94361	+
GWHAAZE00000071	exon	95158	95259	+
GWHAAZE00000071	exon	95352	95478	+
GWHAAZE00000071	exon	95620	95772	+
GWHAAZE00000071	exon	96263	96363	+
GWHAAZE00000071	exon	98618	98791	+
GWHAAZE00000071	exon	100695	100767	+
GWHAAZE00000071	CDS	91542	91636	+
GWHAAZE00000071	CDS	93575	93860	+
GWHAAZE00000071	CDS	93958	94101	+
GWHAAZE00000071	CDS	94312	94361	+
GWHAAZE00000071	CDS	95158	95259	+
GWHAAZE00000071	CDS	95352	95478	+
GWHAAZE00000071	CDS	95620	95772	+
GWHAAZE00000071	CDS	96263	96363	+
GWHAAZE00000071	CDS	98618	98791	+
GWHAAZE00000071	CDS	100695	100767	+

Transcript Sequence
>GWHTAAZE032989 ATGGACGTAGCTACCGGTTCTTCTTCGTATCGTGTTCTTCCCCAAATGAATGTTTCGAGCTCCAATCGCGGCAAATTTAGCCCTAGATCTTCAGCATTATGCCCAAGGAGTAGACTCACCCCTGCCTGCAGCATTTCGTATGAAGGAGAAAGATCAGACTCAACAGATAGAAAATTAAATCTTCATGTGCCTGTTCAGAAGAGAAATTTAGCTGGGAAGATGTTTTGCTCTGTTGGTATATGCACACATCCAGGGAGTAGTGTTATTGACTCTCATTCACACACTGCAGAGGAAAAGATTGGCGTGCTACTTTTGAATCTTGGAGGACCAGAGACACTTAATGATGTTCAGCCGTTTTTGTTCAATTTATTTGCGGATCCGGATATCATACGGCTCCCTAGGCTGTTCCAGTTCCTCCAGCGACCATTGGCACAGCTCATTTCTGTACTTAGGGCTCCCAAAAGTAAAGAAGGATATGCTGCCATTGGAGGTGGTTCACCTTTGCGAAAAATAACAGATGAGCAGGCAAATACTCTCAAAATGGCATTGGAAGCAAAGGAATTCCCTGTAAATGTATTAAGAAGGACAGAATTCTGGCTTGTGGTGCTACCGCTTTATCCTCAATTTTCTATCTCTACGACTGGTTCAAGCATCCGTGTTCTCCAAAACCTCTTCAGGGAAGATGCATTTTTGTCCAGAATGCCTGTTTCTATTATACAGTCCTGGTATCAAAGAGAAGGTTATGTCAAGTCTATGGCTGACTTAATTGAGAAGGAGTTACAAAGTTTTTCCAATTCCGAAGAGGTCATGATATTTTTTAGTGCCCATGGGGTACCAGTCAGTTATGTTGAGAATGCAGGTGATCCATACAGAGATCAAATGGAGGAATGCATTTACTTGATAATGCAAGAATTAAAAGGACGAGGAATTAACAATGATCATACCCTGGCTTACCAGAGCCGAGTAGGGCCAGTTCAATGGTTGAAGCCCTACACTGATGAAGTTCTCGTTGAGCTTGGCCAGAAAGGTGTGAAAAGTCTCCTTGCTGTTCCTGTAAGCTTTGTGAGTGAGCACATAGAGACACTTGAAGAGATCGATATGGAATACAAAGAACTGGCCCTCGAATCTGGCATTGAAAATTGGGGCCGGGTACCTGCTCTTGGGTGCACCGATACCTTCATCACCGATTTAGCAGACGCGGTGATTGAAGCCTTGCCTTCAGCAATAGCAATAAAATGCATTGGCTACTCCATGTATGGCAAGAAGCATTGCCCCCTTAGAAATGCACCTAGTAGTCATTTGTGA

Network for GWHGAAZE032950

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00762.20	Ferrochelatase	99	404	6.30E-89

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01772	hemH, FECH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0006783	biological_process	heme biosynthetic process
GO:0004325	molecular_function	ferrochelatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.082
	SRR3591706	second leaf	10.386
	SRR3591707	mature leaf	10.222
	SRR3591708	Shoot apex	11.301
	SRR3591709	Stem	22.012
	SRR3591710	White floral bud	50.746
	SRR3591711	White flower	62.930
	SRR3591712	Green floral bud	32.432
	SRR3591713	Yellow flower	57.376
SRP173429	SRR8316895	Juvenile bud stage	20.400
	SRR8316896	Juvenile bud stage	25.165
	SRR8316897	Juvenile bud stage	12.722
	SRR8316894	Third green stage	8.019
	SRR8316900	Third green stage	29.532
	SRR8316901	Third green stage	29.335
	SRR8316898	Complete white stage	25.542
	SRR8316899	Complete white stage	34.229
	SRR8316903	Complete white stage	36.662
	SRR8316902	Silver flowering stage	41.060
	SRR8316904	Silver flowering stage	55.249
	SRR8316905	Silver flowering stage	27.242
	SRR8316906	Gold flowering stage	93.142
	SRR8316907	Gold flowering stage	94.179
	SRR8316908	Gold flowering stage	84.765
SRP132670	SRR6706286	Control	31.833
	SRR6706287	Light intensity 50%	28.868
	SRR6706288	Light intensity 20%	30.155
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.612
	CNS0095593	Slightly white alabastrum(diploid) 2	15.887
	CNS0095594	Slightly white alabastrum(diploid) 3	18.227
	CNS0095595	Whole white alabastrum(diploid) 2	20.619
	CNS0095596	Whole white alabastrum(diploid) 3	13.666
	CNS0095597	Whole white alabastrum(diploid) 4	15.793
	CNS0095598	Silvery flower (diploied) 1	19.210
	CNS0095599	Silvery flower (diploied) 2	22.671
	CNS0095600	Silvery flower (diploied) 3	51.149
	CNS0095601	Golden flower (diploid) 1	18.737
	CNS0095602	Golden flower (diploid) 2	42.175
	CNS0095603	Golden flower (diploid) 3	41.596
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.597
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.305
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.203
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.689
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.467
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.608
	CNS0095610	Silvery flower (tetraploid) 1	41.946
	CNS0095611	Silvery flower (tetraploid) 2	38.008
	CNS0095612	Silvery flower (tetraploid) 3	83.339
	CNS0095613	Golden flower (tetraploid) 1	32.908
	CNS0095614	Golden flower (tetraploid) 2	35.158
	CNS0095615	Golden flower (tetraploid) 3	42.985
CRA001975	CRR073297	Stem 1	18.477
	CRR073298	Stem 2	15.018
	CRR073299	Stem 3	14.603
	CRR073300	Leaf 1	19.273
	CRR073301	Leaf 2	25.012
	CRR073302	Leaf 3	23.863
	CRR073303	Juvenile bud 1	29.730
	CRR073304	Juvenile bud 2	28.289
	CRR073305	Juvenile bud 3	22.101
	CRR073306	Third green 1	138.297
	CRR073307	Third green 2	102.199
	CRR073308	Third green 3	116.087
	CRR073309	Second white 1	108.687
	CRR073310	Second white 2	116.830
	CRR073311	Second white 3	101.898
	CRR073312	Silver flowering 1	102.340
	CRR073313	Silver flowering 2	92.151
	CRR073314	Silver flowering 3	111.298
	CRR073315	Gold flowering 1	12.910
	CRR073316	Gold flowering 2	15.505
	CRR073317	Gold flowering 3	10.207
	CRR073318	Tawny withering 1	22.931
	CRR073319	Tawny withering 2	33.204
	CRR073320	Tawny withering 3	21.289