Detail information of GWHGAAZE033001


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP02344.17.7971E-117unnamed protein product [Coffea canephora]
Swissprottr|Q8LE94|RING3_ARATH1E-73E3 ubiquitin-protein ligase At3g02290
trEMBLtr|A0A068U2D7|A0A068U2D7_COFCA3E-117Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313|EMBL:CDP02344.1}
TAIR10AT5G38895.33E-63RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000081gene664440667782-
GWHAAZE00000081mRNA664440667782-
GWHAAZE00000081exon664440664600-
GWHAAZE00000081exon665595666015-
GWHAAZE00000081exon666832667231-
GWHAAZE00000081exon667755667782-
GWHAAZE00000081five_prime_UTR667755667782-
GWHAAZE00000081five_prime_UTR666949667231-
GWHAAZE00000081CDS666832666948-
GWHAAZE00000081CDS665595666015-
GWHAAZE00000081CDS664440664600-
Transcript Sequence

Network for GWHGAAZE033001

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21732141.40E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf30.589
SRR3591706second leaf13.067
SRR3591707mature leaf17.397
SRR3591708Shoot apex16.579
SRR3591709Stem72.500
SRR3591710White floral bud49.876
SRR3591711White flower26.597
SRR3591712Green floral bud35.050
SRR3591713Yellow flower22.849
SRP173429 SRR8316895Juvenile bud stage 11.447
SRR8316896Juvenile bud stage 19.207
SRR8316897Juvenile bud stage 8.294
SRR8316894Third green stage 9.144
SRR8316900Third green stage 27.350
SRR8316901Third green stage 24.128
SRR8316898Complete white stage 20.154
SRR8316899Complete white stage 55.987
SRR8316903Complete white stage 22.197
SRR8316902Silver flowering stage14.485
SRR8316904Silver flowering stage21.247
SRR8316905Silver flowering stage8.971
SRR8316906Gold flowering stage 43.213
SRR8316907Gold flowering stage 34.866
SRR8316908Gold flowering stage 33.177
SRP132670SRR6706286Control30.127
SRR6706287Light intensity 50%29.996
SRR6706288Light intensity 20%28.336
CNP0000432CNS0095592Slightly white alabastrum(diploid) 121.457
CNS0095593Slightly white alabastrum(diploid) 219.313
CNS0095594Slightly white alabastrum(diploid) 323.748
CNS0095595Whole white alabastrum(diploid) 243.702
CNS0095596Whole white alabastrum(diploid) 342.539
CNS0095597Whole white alabastrum(diploid) 458.471
CNS0095598Silvery flower (diploied) 122.956
CNS0095599Silvery flower (diploied) 221.313
CNS0095600Silvery flower (diploied) 339.784
CNS0095601Golden flower (diploid) 124.867
CNS0095602Golden flower (diploid) 235.793
CNS0095603Golden flower (diploid) 335.665
CNS0095604Slightly white alabastrum(tetraploid) 127.057
CNS0095605Slightly white alabastrum(tetraploid) 227.626
CNS0095606Slightly white alabastrum(tetraploid) 316.976
CNS0095607Whole white alabastrum(tetraploid) 157.242
CNS0095608Whole white alabastrum(tetraploid) 272.333
CNS0095609Whole white alabastrum(tetraploid) 335.137
CNS0095610Silvery flower (tetraploid) 133.174
CNS0095611Silvery flower (tetraploid) 247.339
CNS0095612Silvery flower (tetraploid) 331.239
CNS0095613Golden flower (tetraploid) 123.086
CNS0095614Golden flower (tetraploid) 228.711
CNS0095615Golden flower (tetraploid) 337.392
CRA001975CRR073297Stem 124.671
CRR073298Stem 224.716
CRR073299Stem 318.571
CRR073300Leaf 139.655
CRR073301Leaf 226.808
CRR073302Leaf 318.549
CRR073303Juvenile bud 131.103
CRR073304Juvenile bud 222.644
CRR073305Juvenile bud 323.030
CRR073306Third green 117.059
CRR073307Third green 221.093
CRR073308Third green 318.530
CRR073309Second white 120.421
CRR073310Second white 215.236
CRR073311Second white 314.740
CRR073312Silver flowering 113.210
CRR073313Silver flowering 217.770
CRR073314Silver flowering 311.826
CRR073315Gold flowering 123.477
CRR073316Gold flowering 226.396
CRR073317Gold flowering 318.275
CRR073318Tawny withering 150.772
CRR073319Tawny withering 242.175
CRR073320Tawny withering 343.637