Detail information of GWHGAAZE033002


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006430962.12.37426E-62hypothetical protein CICLE_v10012892mg [Citrus clementina]
COGNP_071109.10.0000000230S ribosomal protein S4P
trEMBLtr|V4SU00|V4SU00_9ROSI9E-63Uncharacterized protein {ECO:0000313|EMBL:ESR44202.1}
TAIR10AT5G15750.12E-44Alpha-L RNA-binding motif/Ribosomal protein S4 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000081gene690801691842-
GWHAAZE00000081mRNA690801691842-
GWHAAZE00000081exon691775691842-
GWHAAZE00000081exon690801691266-
GWHAAZE00000081CDS691775691842-
GWHAAZE00000081CDS691035691266-
GWHAAZE00000081three_prime_UTR690801691034-
Transcript Sequence

Network for GWHGAAZE033002

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01479.26S424702.40E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14560IMP3 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0003723molecular_functionRNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf40.600
SRR3591706second leaf26.453
SRR3591707mature leaf22.972
SRR3591708Shoot apex57.565
SRR3591709Stem46.326
SRR3591710White floral bud33.176
SRR3591711White flower50.676
SRR3591712Green floral bud46.320
SRR3591713Yellow flower37.099
SRP173429 SRR8316895Juvenile bud stage 29.331
SRR8316896Juvenile bud stage 45.062
SRR8316897Juvenile bud stage 21.715
SRR8316894Third green stage 14.523
SRR8316900Third green stage 54.860
SRR8316901Third green stage 43.122
SRR8316898Complete white stage 16.719
SRR8316899Complete white stage 56.030
SRR8316903Complete white stage 27.210
SRR8316902Silver flowering stage24.065
SRR8316904Silver flowering stage24.581
SRR8316905Silver flowering stage13.099
SRR8316906Gold flowering stage 35.452
SRR8316907Gold flowering stage 38.123
SRR8316908Gold flowering stage 39.714
SRP132670SRR6706286Control46.880
SRR6706287Light intensity 50%42.088
SRR6706288Light intensity 20%39.216
CNP0000432CNS0095592Slightly white alabastrum(diploid) 163.247
CNS0095593Slightly white alabastrum(diploid) 265.454
CNS0095594Slightly white alabastrum(diploid) 364.725
CNS0095595Whole white alabastrum(diploid) 257.626
CNS0095596Whole white alabastrum(diploid) 363.212
CNS0095597Whole white alabastrum(diploid) 446.778
CNS0095598Silvery flower (diploied) 165.311
CNS0095599Silvery flower (diploied) 264.932
CNS0095600Silvery flower (diploied) 377.648
CNS0095601Golden flower (diploid) 169.439
CNS0095602Golden flower (diploid) 297.862
CNS0095603Golden flower (diploid) 398.167
CNS0095604Slightly white alabastrum(tetraploid) 154.943
CNS0095605Slightly white alabastrum(tetraploid) 258.216
CNS0095606Slightly white alabastrum(tetraploid) 362.655
CNS0095607Whole white alabastrum(tetraploid) 140.389
CNS0095608Whole white alabastrum(tetraploid) 235.804
CNS0095609Whole white alabastrum(tetraploid) 348.742
CNS0095610Silvery flower (tetraploid) 167.220
CNS0095611Silvery flower (tetraploid) 273.951
CNS0095612Silvery flower (tetraploid) 344.683
CNS0095613Golden flower (tetraploid) 1104.612
CNS0095614Golden flower (tetraploid) 284.706
CNS0095615Golden flower (tetraploid) 3200.112
CRA001975CRR073297Stem 156.016
CRR073298Stem 248.963
CRR073299Stem 358.259
CRR073300Leaf 141.937
CRR073301Leaf 242.152
CRR073302Leaf 356.512
CRR073303Juvenile bud 143.073
CRR073304Juvenile bud 237.441
CRR073305Juvenile bud 335.557
CRR073306Third green 119.577
CRR073307Third green 228.272
CRR073308Third green 320.651
CRR073309Second white 119.904
CRR073310Second white 224.992
CRR073311Second white 315.092
CRR073312Silver flowering 122.605
CRR073313Silver flowering 225.832
CRR073314Silver flowering 318.110
CRR073315Gold flowering 134.483
CRR073316Gold flowering 242.216
CRR073317Gold flowering 330.688
CRR073318Tawny withering 164.811
CRR073319Tawny withering 258.604
CRR073320Tawny withering 360.567