Detail information of GWHGAAZE033004


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN75801.11.97868E-48hypothetical protein VITISV_016975 [Vitis vinifera]
trEMBLtr|A5ALD1|A5ALD1_VITVI7E-49Putative uncharacterized protein {ECO:0000313|EMBL:CAN75801.1}
TAIR10AT5G15750.13E-26Alpha-L RNA-binding motif/Ribosomal protein S4 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000081gene697894698442-
GWHAAZE00000081mRNA697894698442-
GWHAAZE00000081exon697894698005-
GWHAAZE00000081exon698180698442-
GWHAAZE00000081CDS698180698442-
GWHAAZE00000081CDS697894698005-
Transcript Sequence

Network for GWHGAAZE033004

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00163.20Ribosomal_S4461053.20E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14560IMP3 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0019843molecular_functionrRNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf40.192
SRR3591706second leaf20.823
SRR3591707mature leaf16.652
SRR3591708Shoot apex40.514
SRR3591709Stem31.940
SRR3591710White floral bud24.193
SRR3591711White flower35.778
SRR3591712Green floral bud34.406
SRR3591713Yellow flower29.256
SRP173429 SRR8316895Juvenile bud stage 25.719
SRR8316896Juvenile bud stage 30.528
SRR8316897Juvenile bud stage 15.521
SRR8316894Third green stage 17.501
SRR8316900Third green stage 33.861
SRR8316901Third green stage 30.439
SRR8316898Complete white stage 12.253
SRR8316899Complete white stage 43.194
SRR8316903Complete white stage 21.142
SRR8316902Silver flowering stage17.577
SRR8316904Silver flowering stage26.171
SRR8316905Silver flowering stage10.459
SRR8316906Gold flowering stage 33.561
SRR8316907Gold flowering stage 36.805
SRR8316908Gold flowering stage 36.307
SRP132670SRR6706286Control33.174
SRR6706287Light intensity 50%26.870
SRR6706288Light intensity 20%27.127
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.657
CNS0095593Slightly white alabastrum(diploid) 231.417
CNS0095594Slightly white alabastrum(diploid) 336.042
CNS0095595Whole white alabastrum(diploid) 224.769
CNS0095596Whole white alabastrum(diploid) 334.786
CNS0095597Whole white alabastrum(diploid) 422.895
CNS0095598Silvery flower (diploied) 140.445
CNS0095599Silvery flower (diploied) 233.376
CNS0095600Silvery flower (diploied) 354.547
CNS0095601Golden flower (diploid) 140.614
CNS0095602Golden flower (diploid) 278.527
CNS0095603Golden flower (diploid) 370.993
CNS0095604Slightly white alabastrum(tetraploid) 132.738
CNS0095605Slightly white alabastrum(tetraploid) 230.101
CNS0095606Slightly white alabastrum(tetraploid) 343.676
CNS0095607Whole white alabastrum(tetraploid) 121.464
CNS0095608Whole white alabastrum(tetraploid) 217.615
CNS0095609Whole white alabastrum(tetraploid) 330.784
CNS0095610Silvery flower (tetraploid) 146.033
CNS0095611Silvery flower (tetraploid) 253.180
CNS0095612Silvery flower (tetraploid) 329.624
CNS0095613Golden flower (tetraploid) 156.069
CNS0095614Golden flower (tetraploid) 253.861
CNS0095615Golden flower (tetraploid) 3170.487
CRA001975CRR073297Stem 138.585
CRR073298Stem 234.587
CRR073299Stem 342.246
CRR073300Leaf 128.907
CRR073301Leaf 223.554
CRR073302Leaf 336.287
CRR073303Juvenile bud 127.426
CRR073304Juvenile bud 230.890
CRR073305Juvenile bud 323.937
CRR073306Third green 113.608
CRR073307Third green 218.797
CRR073308Third green 311.408
CRR073309Second white 119.195
CRR073310Second white 221.466
CRR073311Second white 314.422
CRR073312Silver flowering 120.033
CRR073313Silver flowering 218.433
CRR073314Silver flowering 318.912
CRR073315Gold flowering 125.920
CRR073316Gold flowering 227.197
CRR073317Gold flowering 320.700
CRR073318Tawny withering 134.820
CRR073319Tawny withering 235.628
CRR073320Tawny withering 336.451