Detail information of GWHGAAZE033005


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002278322.26.2442E-109PREDICTED: transcription factor BIM2 [Vitis vinifera]
Swissprottr|Q9CAA4|BIM2_ARATH2E-46Transcription factor BIM2
trEMBLtr|D7SMM6|D7SMM6_VITVI2E-108Putative uncharacterized protein {ECO:0000313|EMBL:CBI16924.3}
TAIR10AT1G69010.11E-38BES1-interacting Myc-like protein 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000081gene704339709319-
GWHAAZE00000081mRNA704339709319-
GWHAAZE00000081exon704339704449-
GWHAAZE00000081exon705569705698-
GWHAAZE00000081exon705826706223-
GWHAAZE00000081exon707495707593-
GWHAAZE00000081exon707720707789-
GWHAAZE00000081exon707926707953-
GWHAAZE00000081exon708341708452-
GWHAAZE00000081exon708664708755-
GWHAAZE00000081exon709229709319-
GWHAAZE00000081CDS709229709319-
GWHAAZE00000081CDS708664708755-
GWHAAZE00000081CDS708341708452-
GWHAAZE00000081CDS707926707953-
GWHAAZE00000081CDS707720707789-
GWHAAZE00000081CDS707495707593-
GWHAAZE00000081CDS705826706223-
GWHAAZE00000081CDS705569705698-
GWHAAZE00000081CDS704339704449-
Transcript Sequence

Network for GWHGAAZE033005

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00010.27HLH1031402.30E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybHLH

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046983molecular_functionprotein dimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.019
SRR3591706second leaf7.519
SRR3591707mature leaf7.062
SRR3591708Shoot apex15.074
SRR3591709Stem10.604
SRR3591710White floral bud8.206
SRR3591711White flower9.353
SRR3591712Green floral bud10.951
SRR3591713Yellow flower7.717
SRP173429 SRR8316895Juvenile bud stage 6.877
SRR8316896Juvenile bud stage 11.121
SRR8316897Juvenile bud stage 3.891
SRR8316894Third green stage 4.869
SRR8316900Third green stage 10.878
SRR8316901Third green stage 11.638
SRR8316898Complete white stage 3.784
SRR8316899Complete white stage 12.809
SRR8316903Complete white stage 6.176
SRR8316902Silver flowering stage2.912
SRR8316904Silver flowering stage5.252
SRR8316905Silver flowering stage2.336
SRR8316906Gold flowering stage 7.167
SRR8316907Gold flowering stage 5.589
SRR8316908Gold flowering stage 8.620
SRP132670SRR6706286Control10.545
SRR6706287Light intensity 50%9.228
SRR6706288Light intensity 20%10.449
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.083
CNS0095593Slightly white alabastrum(diploid) 28.483
CNS0095594Slightly white alabastrum(diploid) 36.540
CNS0095595Whole white alabastrum(diploid) 24.567
CNS0095596Whole white alabastrum(diploid) 36.120
CNS0095597Whole white alabastrum(diploid) 45.010
CNS0095598Silvery flower (diploied) 14.969
CNS0095599Silvery flower (diploied) 25.244
CNS0095600Silvery flower (diploied) 36.966
CNS0095601Golden flower (diploid) 14.760
CNS0095602Golden flower (diploid) 26.242
CNS0095603Golden flower (diploid) 35.419
CNS0095604Slightly white alabastrum(tetraploid) 110.027
CNS0095605Slightly white alabastrum(tetraploid) 26.996
CNS0095606Slightly white alabastrum(tetraploid) 311.140
CNS0095607Whole white alabastrum(tetraploid) 15.913
CNS0095608Whole white alabastrum(tetraploid) 24.207
CNS0095609Whole white alabastrum(tetraploid) 38.235
CNS0095610Silvery flower (tetraploid) 18.722
CNS0095611Silvery flower (tetraploid) 27.916
CNS0095612Silvery flower (tetraploid) 37.169
CNS0095613Golden flower (tetraploid) 16.417
CNS0095614Golden flower (tetraploid) 27.917
CNS0095615Golden flower (tetraploid) 35.544
CRA001975CRR073297Stem 112.778
CRR073298Stem 211.739
CRR073299Stem 39.920
CRR073300Leaf 111.951
CRR073301Leaf 212.416
CRR073302Leaf 310.765
CRR073303Juvenile bud 18.465
CRR073304Juvenile bud 25.808
CRR073305Juvenile bud 37.604
CRR073306Third green 12.098
CRR073307Third green 22.099
CRR073308Third green 33.334
CRR073309Second white 10.886
CRR073310Second white 22.157
CRR073311Second white 31.922
CRR073312Silver flowering 11.345
CRR073313Silver flowering 21.816
CRR073314Silver flowering 33.580
CRR073315Gold flowering 14.660
CRR073316Gold flowering 23.816
CRR073317Gold flowering 32.725
CRR073318Tawny withering 18.511
CRR073319Tawny withering 27.129
CRR073320Tawny withering 36.975