Detail information of GWHGAAZE033006


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007032927.10Transmembrane amino acid transporter family protein isoform 1 [Theobroma cacao]
Swissprottr|Q9SS86|LHTL4_ARATH0.000003Lysine histidine transporter-like 4
trEMBLtr|A0A061EGR7|A0A061EGR7_THECC0Transmembrane amino acid transporter family protein isoform 1 {ECO:0000313|EMBL:EOY03853.1}
TAIR10AT3G30390.23E-162Transmembrane amino acid transporter family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000081gene12073231209312-
GWHAAZE00000081mRNA12073231209312-
GWHAAZE00000081exon12073231207485-
GWHAAZE00000081exon12075961208061-
GWHAAZE00000081exon12081521208355-
GWHAAZE00000081exon12086431208795-
GWHAAZE00000081exon12089041209312-
GWHAAZE00000081CDS12089041209312-
GWHAAZE00000081CDS12086431208795-
GWHAAZE00000081CDS12081521208355-
GWHAAZE00000081CDS12075961208061-
GWHAAZE00000081CDS12073231207485-
Transcript Sequence

Network for GWHGAAZE033006

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01490.19Aa_trans384456.10E-57
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K14207SLC38A2, SNAT2 Protein digestion and absorption map04974
Glutamatergic synapsemap04724
GABAergic synapsemap04727

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.006
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.063
SRR3591709Stem0.318
SRR3591710White floral bud27.589
SRR3591711White flower1.465
SRR3591712Green floral bud1.901
SRR3591713Yellow flower0.953
SRP173429 SRR8316895Juvenile bud stage 0.185
SRR8316896Juvenile bud stage 1.056
SRR8316897Juvenile bud stage 0.196
SRR8316894Third green stage 0.201
SRR8316900Third green stage 0.127
SRR8316901Third green stage 0.250
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.445
SRR8316903Complete white stage 0.073
SRR8316902Silver flowering stage0.388
SRR8316904Silver flowering stage1.040
SRR8316905Silver flowering stage0.300
SRR8316906Gold flowering stage 0.056
SRR8316907Gold flowering stage 0.050
SRR8316908Gold flowering stage 0.072
SRP132670SRR6706286Control0.678
SRR6706287Light intensity 50%1.789
SRR6706288Light intensity 20%0.270
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.818
CNS0095593Slightly white alabastrum(diploid) 20.154
CNS0095594Slightly white alabastrum(diploid) 30.664
CNS0095595Whole white alabastrum(diploid) 20.081
CNS0095596Whole white alabastrum(diploid) 30.059
CNS0095597Whole white alabastrum(diploid) 40.030
CNS0095598Silvery flower (diploied) 10.535
CNS0095599Silvery flower (diploied) 24.718
CNS0095600Silvery flower (diploied) 31.740
CNS0095601Golden flower (diploid) 10.960
CNS0095602Golden flower (diploid) 21.114
CNS0095603Golden flower (diploid) 30.874
CNS0095604Slightly white alabastrum(tetraploid) 10.371
CNS0095605Slightly white alabastrum(tetraploid) 20.525
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.110
CNS0095608Whole white alabastrum(tetraploid) 20.974
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.238
CNS0095611Silvery flower (tetraploid) 22.334
CNS0095612Silvery flower (tetraploid) 35.684
CNS0095613Golden flower (tetraploid) 10.376
CNS0095614Golden flower (tetraploid) 20.051
CNS0095615Golden flower (tetraploid) 35.436
CRA001975CRR073297Stem 11.421
CRR073298Stem 21.199
CRR073299Stem 31.094
CRR073300Leaf 10.683
CRR073301Leaf 20.822
CRR073302Leaf 30.349
CRR073303Juvenile bud 113.171
CRR073304Juvenile bud 231.546
CRR073305Juvenile bud 32.480
CRR073306Third green 111.123
CRR073307Third green 217.068
CRR073308Third green 313.344
CRR073309Second white 11.685
CRR073310Second white 22.249
CRR073311Second white 31.211
CRR073312Silver flowering 115.104
CRR073313Silver flowering 216.934
CRR073314Silver flowering 36.821
CRR073315Gold flowering 113.907
CRR073316Gold flowering 22.285
CRR073317Gold flowering 38.639
CRR073318Tawny withering 111.862
CRR073319Tawny withering 211.648
CRR073320Tawny withering 39.146