Detail information of GWHGAAZE033007


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004233400.14.82895E-69PREDICTED: E3 ubiquitin-protein ligase CIP8-like [Solanum lycopersicum]
Swissprottr|Q9SPL2|CIP8_ARATH5E-28E3 ubiquitin-protein ligase CIP8
trEMBLtr|K4B6Z7|K4B6Z7_SOLLC2E-69Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g065650.1.1}
TAIR10AT3G02340.14E-39RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000081gene12279101229256+
GWHAAZE00000081mRNA12279101229256+
GWHAAZE00000081exon12279101229256+
GWHAAZE00000081CDS12279101229256+
Transcript Sequence

Network for GWHGAAZE033007

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_23764171.90E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.088
SRR3591706second leaf5.997
SRR3591707mature leaf3.556
SRR3591708Shoot apex12.793
SRR3591709Stem18.153
SRR3591710White floral bud9.877
SRR3591711White flower8.284
SRR3591712Green floral bud9.235
SRR3591713Yellow flower5.724
SRP173429 SRR8316895Juvenile bud stage 9.120
SRR8316896Juvenile bud stage 10.189
SRR8316897Juvenile bud stage 7.061
SRR8316894Third green stage 5.433
SRR8316900Third green stage 10.441
SRR8316901Third green stage 10.212
SRR8316898Complete white stage 2.714
SRR8316899Complete white stage 10.225
SRR8316903Complete white stage 4.251
SRR8316902Silver flowering stage2.495
SRR8316904Silver flowering stage4.791
SRR8316905Silver flowering stage2.239
SRR8316906Gold flowering stage 4.646
SRR8316907Gold flowering stage 6.728
SRR8316908Gold flowering stage 5.996
SRP132670SRR6706286Control4.931
SRR6706287Light intensity 50%5.499
SRR6706288Light intensity 20%5.469
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.011
CNS0095593Slightly white alabastrum(diploid) 210.348
CNS0095594Slightly white alabastrum(diploid) 312.833
CNS0095595Whole white alabastrum(diploid) 29.346
CNS0095596Whole white alabastrum(diploid) 37.213
CNS0095597Whole white alabastrum(diploid) 48.405
CNS0095598Silvery flower (diploied) 15.924
CNS0095599Silvery flower (diploied) 26.700
CNS0095600Silvery flower (diploied) 37.536
CNS0095601Golden flower (diploid) 111.471
CNS0095602Golden flower (diploid) 28.373
CNS0095603Golden flower (diploid) 38.221
CNS0095604Slightly white alabastrum(tetraploid) 18.226
CNS0095605Slightly white alabastrum(tetraploid) 27.830
CNS0095606Slightly white alabastrum(tetraploid) 38.334
CNS0095607Whole white alabastrum(tetraploid) 19.634
CNS0095608Whole white alabastrum(tetraploid) 26.636
CNS0095609Whole white alabastrum(tetraploid) 38.284
CNS0095610Silvery flower (tetraploid) 16.183
CNS0095611Silvery flower (tetraploid) 25.189
CNS0095612Silvery flower (tetraploid) 35.176
CNS0095613Golden flower (tetraploid) 14.570
CNS0095614Golden flower (tetraploid) 27.019
CNS0095615Golden flower (tetraploid) 35.146
CRA001975CRR073297Stem 14.508
CRR073298Stem 27.378
CRR073299Stem 34.821
CRR073300Leaf 17.840
CRR073301Leaf 27.022
CRR073302Leaf 35.213
CRR073303Juvenile bud 16.421
CRR073304Juvenile bud 24.516
CRR073305Juvenile bud 36.560
CRR073306Third green 11.853
CRR073307Third green 22.971
CRR073308Third green 32.418
CRR073309Second white 13.821
CRR073310Second white 22.713
CRR073311Second white 32.357
CRR073312Silver flowering 13.612
CRR073313Silver flowering 22.758
CRR073314Silver flowering 32.975
CRR073315Gold flowering 11.415
CRR073316Gold flowering 22.292
CRR073317Gold flowering 33.235
CRR073318Tawny withering 14.392
CRR073319Tawny withering 24.391
CRR073320Tawny withering 35.664