Gene detail

Detail information of GWHGAAZE033009

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009792003.1	0	PREDICTED: probable galacturonosyltransferase 9 [Nicotiana sylvestris]
COG	YP_003549730.1	0.00000006	glycosyl transferase family protein
Swissprot	tr\|Q9FWA4\|GAUT9_ARATH	0	Probable galacturonosyltransferase 9
trEMBL	tr\|A0A068U425\|A0A068U425_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02368.1}
TAIR10	AT3G02350.1	0	galacturonosyltransferase 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000081	gene	1249106	1250721	+
GWHAAZE00000081	mRNA	1249106	1250721	+
GWHAAZE00000081	exon	1249106	1250314	+
GWHAAZE00000081	exon	1250446	1250721	+
GWHAAZE00000081	CDS	1249106	1250314	+
GWHAAZE00000081	CDS	1250446	1250721	+

Transcript Sequence
>GWHTAAZE033048 ATGCATAGGACTTTTTTAGCATTGAAGTCGGATCCTTTGAAGACTAGGCTAAATTTGATTTATAAGCAAGCGAATGACCACATAGTGCTTGTGAATGCATATGCGGCTTATGCAAGGAAGCTTAAGCTTGATATCTCCAGGCAGCTTAATTTGTTTGATGACTTGGCAAATAATTTCTCACATCTGGCATTGAAGCCGAGTTATCGAACATCATTGTTCGAGTCAGATGGGCCAGTGGATGAGGATTTGTTGAGGCAATTTGAAAAGGAGGTGAAGGATAAAGTCAAGTATGCTAGGTTGATGGTTGCAGAGTCTAAAGAGTCTTATGATAATCAATTGAAGATTCAGAAACTGAAAGACACAATATTTGCAGTAAATGAGTTGCTTATTAAGGCAAAGAAGAATGGTGCATTTGCTAGCTTAATTGCAGCTAAATCAACTCCCAAAAGTTTGCACTGTCTTGCAATGCGGCTCATGGGGGAGCGGATTGCAAATCCTGAAAAGTATAGAGATGATGAGCCTAAGCCTGAGTTTGAGGACCCTACTTTATACCATTATGCTATATTCTCAGATAATGTGATTGCGGTCTCTGTTGTGGTGAATTCGGTTGTGAAGAATGCAAAAGAGCCATGGAAGCATGTTATCCATGTTGTTACAGATAGGATGAATATTGCAGCTATGAAGGTGTGGTTTAAGATGAGACTGGTTGAAGGGGCACATGTCGAGGTGAAAGCTGTGGAGGATTATACCTTTTTGAATTCCTCATATGTCCCGGTATTGAGGCAAAAGGATTCTGTGAATCTGCAGAAGTTTTACTTTGAGAACAGGGCAGAAAAGGCGACTAAAGATGTTAATAACTTGAAATTCAAGGACCCCAAGTACTTGTCAATGATGAATCACCTTCGGTTTTACTTGCCTGAGATGTACCCAAAGCTGCACCGCATACTGTTTTTGGATGATGATGTTGTAGTTCAGAAGGATTTGACAACATTGTGGAACATTGACCTGAATGGAAAGGTGAATGGGGCTGTTGAAACATGCTTTGGATCGTTCCACCGTTTTTCTCAGTATTTGAACTTCTCTCATCCTCTCATTAGGGAGAAATTCAATCCCAAGGCTTGTGCCTGGGCTTTCGGCATGAATATATTTGATCTTGATGCTTGGAGGAGTGAGAAATGCACCGATCAGTATCATTACTGGCAGAACCTAAATGAGGACCGGACTTTGTGGAAATTGGGAACACTCCCACCTGGACTGATTACATTTTATTCAAAAACAAAATCACTGGACAAATCATGGCATGTGCTTGGTCTTGGGTACAATCCGAGTATTAGCATGGATGAGATTAATAATGCTGCTGTCATCCATTTCAATGGAAACATGAAACCTTGGCTTGACATTGCAATGAACCAATTTAAGCATCTCTGGACTAAATATGTTGATAGCGAAATGGAGTTTGTGCAGATGTGCAATTTTGGTCTGTAG

Network for GWHGAAZE033009

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01501.21	Glyco_transf_8	153	468	4.20E-92

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13648	GAUT	Metabolic pathways	map01100
K13648	GAUT	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.669
	SRR3591706	second leaf	3.871
	SRR3591707	mature leaf	3.688
	SRR3591708	Shoot apex	3.409
	SRR3591709	Stem	13.023
	SRR3591710	White floral bud	6.369
	SRR3591711	White flower	4.290
	SRR3591712	Green floral bud	20.742
	SRR3591713	Yellow flower	3.044
SRP173429	SRR8316895	Juvenile bud stage	3.521
	SRR8316896	Juvenile bud stage	11.236
	SRR8316897	Juvenile bud stage	3.695
	SRR8316894	Third green stage	6.771
	SRR8316900	Third green stage	26.004
	SRR8316901	Third green stage	23.460
	SRR8316898	Complete white stage	3.655
	SRR8316899	Complete white stage	10.100
	SRR8316903	Complete white stage	7.271
	SRR8316902	Silver flowering stage	2.285
	SRR8316904	Silver flowering stage	4.642
	SRR8316905	Silver flowering stage	2.095
	SRR8316906	Gold flowering stage	5.180
	SRR8316907	Gold flowering stage	5.584
	SRR8316908	Gold flowering stage	2.797
SRP132670	SRR6706286	Control	7.665
	SRR6706287	Light intensity 50%	9.632
	SRR6706288	Light intensity 20%	9.629
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.782
	CNS0095593	Slightly white alabastrum(diploid) 2	15.632
	CNS0095594	Slightly white alabastrum(diploid) 3	15.252
	CNS0095595	Whole white alabastrum(diploid) 2	26.932
	CNS0095596	Whole white alabastrum(diploid) 3	31.877
	CNS0095597	Whole white alabastrum(diploid) 4	26.479
	CNS0095598	Silvery flower (diploied) 1	5.949
	CNS0095599	Silvery flower (diploied) 2	4.095
	CNS0095600	Silvery flower (diploied) 3	8.731
	CNS0095601	Golden flower (diploid) 1	4.311
	CNS0095602	Golden flower (diploid) 2	8.562
	CNS0095603	Golden flower (diploid) 3	7.913
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.673
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.523
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.854
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.445
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.520
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.523
	CNS0095610	Silvery flower (tetraploid) 1	6.631
	CNS0095611	Silvery flower (tetraploid) 2	7.538
	CNS0095612	Silvery flower (tetraploid) 3	4.317
	CNS0095613	Golden flower (tetraploid) 1	3.091
	CNS0095614	Golden flower (tetraploid) 2	5.946
	CNS0095615	Golden flower (tetraploid) 3	3.355
CRA001975	CRR073297	Stem 1	4.632
	CRR073298	Stem 2	5.309
	CRR073299	Stem 3	3.555
	CRR073300	Leaf 1	12.481
	CRR073301	Leaf 2	9.732
	CRR073302	Leaf 3	6.878
	CRR073303	Juvenile bud 1	10.183
	CRR073304	Juvenile bud 2	8.266
	CRR073305	Juvenile bud 3	4.830
	CRR073306	Third green 1	2.119
	CRR073307	Third green 2	3.757
	CRR073308	Third green 3	1.584
	CRR073309	Second white 1	2.456
	CRR073310	Second white 2	1.575
	CRR073311	Second white 3	1.476
	CRR073312	Silver flowering 1	2.827
	CRR073313	Silver flowering 2	2.282
	CRR073314	Silver flowering 3	1.861
	CRR073315	Gold flowering 1	1.322
	CRR073316	Gold flowering 2	2.170
	CRR073317	Gold flowering 3	1.162
	CRR073318	Tawny withering 1	5.087
	CRR073319	Tawny withering 2	3.986
	CRR073320	Tawny withering 3	5.023