Gene detail

Detail information of GWHGAAZE033010

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP24308.1	hypothetical protein JCGZ_25604 [Jatropha curcas]
COG	YP_007156027.1	6-phosphogluconate dehydrogenase (decarboxylating)
Swissprot	tr\|Q9FWA3\|6GPD3_ARATH	6-phosphogluconate dehydrogenase, decarboxylating 3
trEMBL	tr\|A0A067JNE2\|A0A067JNE2_JATCU	6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256\|PIRNR:PIRNR000109, ECO:0000256\|RuleBase:RU000485}
TAIR10	AT3G02360.2	6-phosphogluconate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000081	gene	1259326	1260795	+
GWHAAZE00000081	mRNA	1259326	1260795	+
GWHAAZE00000081	exon	1259326	1260795	+
GWHAAZE00000081	CDS	1259326	1260795	+

Transcript Sequence
>GWHTAAZE033049 ATGGCTGCTCCACCCTCAACCCCAACAAGGATAGGCCTGGCCGGTCTTGCTGTCATGGGCCAAAACCTTGCCCTCAACATCGCTGAGAAAGGCTTTCCCATTTCTGTTTACAATCGAACTACCTCCAAAGTTGATGAGACAGTTGAACGAGCTAAACTGGAAGGAAATCTTCCCGTATTTGGATTCCACGATCCAGAAGCATTTGTTCATTCAGTCCAAAAACCTCGGGTAATCATCATGCTTGTTAAGGCTGGAGCACCTGTTGACCAAACAATTAAAACCCTCAGCGCTTACATGGAGAAAGGAGATTGTATCATTGATGGTGGGAATGAGTGGTACGAGAACACCGAGAGGAGAGAGAAAGCCATGGCTGAGTTGGGTCTTTTGTACCTCGGAATGGGAGTTTCCGGTGGCGAAGAGGGTGCACGAAATGGACCCTCTTTGATGCCAGGAGGGTCCTTTGAGGCTTACAAATACATTGAAGACATCATTCTTAAGGTAGCAGCTCAAGTACCAGATAGTGGTCCTTGCGTTACTTACATTGGCAAAGGAGGATCAGGCAATTTCGTGAAGATGGTTCATAACGGAATTGAGTACGGTGACATGCAGCTGATTGCAGAGGCTTATGATGTGCTAAAATCTGTTGGAAAGCTTTCAAATGAAGAACTACATAACGTTTTCACCGAATGGAACAAGAGTGAGCTTTTAAGCTTCTTGGTTGAAATCACTGCGGATATATTCGCCATTAAGGATGACAAGGGAGATGGTTATTTGGTCGACAAGGTTTTGGACAAAACCGGAATGAAGGGTACCGGTAAATGGACCGTTCAGCAAGCCGCTGATCTGTCAGTTGCAGCCCCCACAATTGCATGTTCCCTTGATTCAAGATTTCTCAGTGGGTTGAAGGAGGAAAGGGTAGAAGCTGCCAAAGTTTTCAAATCGGGCGGTTTTGGTGACATCTTGACCGATCAAGCGGTGGACAAGGAGAAGTTGATTGATGATGTGAAGCAAGCACTATATGCATCCAAAATTTGCAGCTACGCACAAGGGATGAATCTGATACGTGCTAAGAGCATTGAAAAGGGGTGGGGCTTGAAGTTGGGTGAATTGGCTAGGATCTGGAAGGGTGGTTGCATCATTCGAGCCATTTTCTTGGACCGAATCAAGAAGGCCTATGATAGGAACGCCGATCTTGCTAACCTTCTAGTGGACCCTGAGTTTGCAAAGGAAATTATTGACCGTCAATCTGCTTGGCGAAGAGTTGTTTGCCTCGCTATCAACTCAGGTATTAGTACTCCAGGTATGTCCACAAGTCTTGCTTATTTTGACACTTACAGAAGGGAGAGATTACCAGCTAATTTGGTCCAAGCTCAAAGAGATTACTTTGGGGCTCATACATATGAAAGGACCGACATGCCGGGAGCTTTCCATACTGAGTGGTTCAAGTTAGCCAAACAGACCAAGAAGTAA

Network for GWHGAAZE033010

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03446.16	NAD_binding_2	10	181	1.10E-46
PF00393.20	6PGD	187	480	1.30E-124

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00033	PGD, gnd, gntZ	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pentose phosphate pathway	map00030
		Glutathione metabolism	map00480

Gene Ontology

GO term	Ontology	Name
GO:0006098	biological_process	pentose-phosphate shunt
GO:0055114	biological_process	oxidation-reduction process
GO:0050661	molecular_function	NADP binding
GO:0004616	molecular_function	phosphogluconate dehydrogenase (decarboxylating) activity
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	164.692
	SRR3591706	second leaf	102.452
	SRR3591707	mature leaf	69.775
	SRR3591708	Shoot apex	108.461
	SRR3591709	Stem	222.663
	SRR3591710	White floral bud	59.872
	SRR3591711	White flower	167.025
	SRR3591712	Green floral bud	96.236
	SRR3591713	Yellow flower	315.284
SRP173429	SRR8316895	Juvenile bud stage	96.778
	SRR8316896	Juvenile bud stage	111.970
	SRR8316897	Juvenile bud stage	53.245
	SRR8316894	Third green stage	50.338
	SRR8316900	Third green stage	137.884
	SRR8316901	Third green stage	123.040
	SRR8316898	Complete white stage	48.921
	SRR8316899	Complete white stage	121.767
	SRR8316903	Complete white stage	63.941
	SRR8316902	Silver flowering stage	81.503
	SRR8316904	Silver flowering stage	114.767
	SRR8316905	Silver flowering stage	57.716
	SRR8316906	Gold flowering stage	331.327
	SRR8316907	Gold flowering stage	233.194
	SRR8316908	Gold flowering stage	389.810
SRP132670	SRR6706286	Control	157.123
	SRR6706287	Light intensity 50%	159.993
	SRR6706288	Light intensity 20%	166.320
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	100.807
	CNS0095593	Slightly white alabastrum(diploid) 2	102.858
	CNS0095594	Slightly white alabastrum(diploid) 3	103.268
	CNS0095595	Whole white alabastrum(diploid) 2	82.951
	CNS0095596	Whole white alabastrum(diploid) 3	94.372
	CNS0095597	Whole white alabastrum(diploid) 4	83.404
	CNS0095598	Silvery flower (diploied) 1	83.875
	CNS0095599	Silvery flower (diploied) 2	78.201
	CNS0095600	Silvery flower (diploied) 3	134.865
	CNS0095601	Golden flower (diploid) 1	82.595
	CNS0095602	Golden flower (diploid) 2	170.842
	CNS0095603	Golden flower (diploid) 3	169.506
	CNS0095604	Slightly white alabastrum(tetraploid) 1	104.344
	CNS0095605	Slightly white alabastrum(tetraploid) 2	96.463
	CNS0095606	Slightly white alabastrum(tetraploid) 3	217.723
	CNS0095607	Whole white alabastrum(tetraploid) 1	62.815
	CNS0095608	Whole white alabastrum(tetraploid) 2	49.069
	CNS0095609	Whole white alabastrum(tetraploid) 3	143.518
	CNS0095610	Silvery flower (tetraploid) 1	176.568
	CNS0095611	Silvery flower (tetraploid) 2	154.997
	CNS0095612	Silvery flower (tetraploid) 3	128.204
	CNS0095613	Golden flower (tetraploid) 1	119.409
	CNS0095614	Golden flower (tetraploid) 2	221.020
	CNS0095615	Golden flower (tetraploid) 3	66.286
CRA001975	CRR073297	Stem 1	133.081
	CRR073298	Stem 2	126.555
	CRR073299	Stem 3	148.197
	CRR073300	Leaf 1	137.642
	CRR073301	Leaf 2	127.530
	CRR073302	Leaf 3	145.642
	CRR073303	Juvenile bud 1	139.902
	CRR073304	Juvenile bud 2	147.420
	CRR073305	Juvenile bud 3	132.627
	CRR073306	Third green 1	142.085
	CRR073307	Third green 2	104.881
	CRR073308	Third green 3	119.025
	CRR073309	Second white 1	195.041
	CRR073310	Second white 2	146.957
	CRR073311	Second white 3	121.051
	CRR073312	Silver flowering 1	350.934
	CRR073313	Silver flowering 2	439.117
	CRR073314	Silver flowering 3	369.969
	CRR073315	Gold flowering 1	63.061
	CRR073316	Gold flowering 2	76.523
	CRR073317	Gold flowering 3	89.422
	CRR073318	Tawny withering 1	185.304
	CRR073319	Tawny withering 2	152.400
	CRR073320	Tawny withering 3	162.029