Gene detail

Detail information of GWHGAAZE033012

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008230340.1	2.1244E-163	PREDICTED: zinc finger protein CONSTANS-LIKE 2 [Prunus mume]
Swissprot	tr\|Q96502\|COL2_ARATH	2E-134	Zinc finger protein CONSTANS-LIKE 2
trEMBL	tr\|M5WSC3\|M5WSC3_PRUPE	2E-162	Uncharacterized protein {ECO:0000313\|EMBL:EMJ16712.1}
TAIR10	AT3G02380.1	3E-95	CONSTANS-like 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000081	gene	1288169	1290264	-
GWHAAZE00000081	mRNA	1288169	1290264	-
GWHAAZE00000081	exon	1288169	1288528	-
GWHAAZE00000081	exon	1289494	1290264	-
GWHAAZE00000081	CDS	1289494	1290264	-
GWHAAZE00000081	CDS	1288169	1288528	-

Transcript Sequence
>GWHTAAZE033051 ATGTTGAAAGAGGAAACCCATACTGACAAGTGGCAGCGCGTATGCGACATGTGCCGGTCGGCCACCTGTACCGTGTACTGTCGGGCAGACTCGGCCTACCTATGCACGGGCTGTGACAGCCGCATCCACGCTGCCAACCGTGTGGCCTCCAGGCACGAGCGCGTGTGGGTGTGCGGAGCCTGCGAACAGGCTCCCGCTGCCTTCATCTGCAAGGCGGATGCTGCGTCGCTCTGCATAGCATGCGACACTGACATCCACTCCGCCAACCCTCTGGCCCGCCGCCACCACCGAGTCCCCATTTCACCCATCTCCGGATGCCTCTATGGGCCCCTCCCTGGAGGGTCGGACCCTGAGGTGGACGGGTTTTTGGGTCAAGAAGACGAGGAAGATGATGAAGAAGATGAAGCAGCTTCGTGGTTGTTCGTGAATCCAATTAAGAACATCCACCAGAACCAAAACAATATTGGGAATTTGTTTGGTGATGATTACTTGGATCTTATCGAGTACAATTCTTGTGAAGACAATAATCAGTTTAGTATTGAACACTACAATAACAGTGGTAATACTAATAATAATAAGCTGCTGCAGCAGTACGATGGTGATAGTACTGTACCTCAGAAGAGTTGTGCAGAGGATAGTGTTGTGCCTGTTCAGTGCAGAGAGAGGGAAAACTGTCAGCATCAGCAGCAAAAGCGCCTTAATTTTCAGTTGGGGATGGATCACGAGAACTCAAATTCCGGCTACGGTTACCCCGCTTCGATTAGTCACAGCGTATCAATCTCATCCATGGATGTTGGTGTTGTTCCTGAATCTACAATGAGTGATGTCTCAATCTCTCACCCAAGACCCCACAAAGGCACAATTGACCTATTCTTAAGCCCTTTCGTTCAGATGCCAACACAACTTACACCCATGGACAGAGAGGCCAGAGTCCTCAGATATAGAGAGAAGAAGAAGACACGGAAATTTGAGAAGACGATCAGGTATGCCTCGAGGAAGGCATACGCAGAAACTAGACCTAGGATCAAAGGCCGGTTTGCAAAGAGAACCGATAGGGAAGTTGAAGCGGACCAGATGTTCTGCACAACACTAATGGCCGAAAATGGATATGGCATCGTCCCGTCATTCTAA

Network for GWHGAAZE033012

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00643.25	zf-B_box	54	100	3.60E-07
PF06203.15	CCT	307	349	1.10E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-CO-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.204
	SRR3591706	second leaf	42.293
	SRR3591707	mature leaf	52.987
	SRR3591708	Shoot apex	35.904
	SRR3591709	Stem	7.050
	SRR3591710	White floral bud	9.107
	SRR3591711	White flower	12.298
	SRR3591712	Green floral bud	2.299
	SRR3591713	Yellow flower	21.444
SRP173429	SRR8316895	Juvenile bud stage	10.438
	SRR8316896	Juvenile bud stage	10.176
	SRR8316897	Juvenile bud stage	7.009
	SRR8316894	Third green stage	2.541
	SRR8316900	Third green stage	3.067
	SRR8316901	Third green stage	3.008
	SRR8316898	Complete white stage	5.729
	SRR8316899	Complete white stage	7.398
	SRR8316903	Complete white stage	10.227
	SRR8316902	Silver flowering stage	5.277
	SRR8316904	Silver flowering stage	6.732
	SRR8316905	Silver flowering stage	2.715
	SRR8316906	Gold flowering stage	26.418
	SRR8316907	Gold flowering stage	21.818
	SRR8316908	Gold flowering stage	24.841
SRP132670	SRR6706286	Control	14.916
	SRR6706287	Light intensity 50%	13.997
	SRR6706288	Light intensity 20%	14.718
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.891
	CNS0095593	Slightly white alabastrum(diploid) 2	4.008
	CNS0095594	Slightly white alabastrum(diploid) 3	7.365
	CNS0095595	Whole white alabastrum(diploid) 2	2.177
	CNS0095596	Whole white alabastrum(diploid) 3	1.076
	CNS0095597	Whole white alabastrum(diploid) 4	1.246
	CNS0095598	Silvery flower (diploied) 1	6.720
	CNS0095599	Silvery flower (diploied) 2	6.380
	CNS0095600	Silvery flower (diploied) 3	6.366
	CNS0095601	Golden flower (diploid) 1	11.794
	CNS0095602	Golden flower (diploid) 2	10.606
	CNS0095603	Golden flower (diploid) 3	9.686
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.795
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.827
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.018
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.641
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.368
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.227
	CNS0095610	Silvery flower (tetraploid) 1	7.347
	CNS0095611	Silvery flower (tetraploid) 2	4.690
	CNS0095612	Silvery flower (tetraploid) 3	3.520
	CNS0095613	Golden flower (tetraploid) 1	10.610
	CNS0095614	Golden flower (tetraploid) 2	10.696
	CNS0095615	Golden flower (tetraploid) 3	92.665
CRA001975	CRR073297	Stem 1	4.608
	CRR073298	Stem 2	4.381
	CRR073299	Stem 3	5.635
	CRR073300	Leaf 1	5.926
	CRR073301	Leaf 2	4.714
	CRR073302	Leaf 3	4.001
	CRR073303	Juvenile bud 1	9.517
	CRR073304	Juvenile bud 2	19.561
	CRR073305	Juvenile bud 3	13.062
	CRR073306	Third green 1	336.442
	CRR073307	Third green 2	256.979
	CRR073308	Third green 3	291.601
	CRR073309	Second white 1	155.949
	CRR073310	Second white 2	161.966
	CRR073311	Second white 3	185.687
	CRR073312	Silver flowering 1	106.460
	CRR073313	Silver flowering 2	72.743
	CRR073314	Silver flowering 3	37.263
	CRR073315	Gold flowering 1	1.934
	CRR073316	Gold flowering 2	2.666
	CRR073317	Gold flowering 3	2.607
	CRR073318	Tawny withering 1	0.677
	CRR073319	Tawny withering 2	1.070
	CRR073320	Tawny withering 3	0.519