Gene detail

Detail information of GWHGAAZE033014

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009794376.1	4.34898E-94	PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Nicotiana sylvestris]
COG	YP_458895.1	4E-24	enoyl-CoA hydratase/isomeras
Swissprot	tr\|Q9LKJ1\|HIBC1_ARATH	1E-86	3-hydroxyisobutyryl-CoA hydrolase 1
trEMBL	tr\|A0A067KKY6\|A0A067KKY6_JATCU	1E-90	Uncharacterized protein {ECO:0000313\|EMBL:KDP32479.1}
TAIR10	AT5G65940.1	7E-72	beta-hydroxyisobutyryl-CoA hydrolase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000081	gene	1409800	1416986	+
GWHAAZE00000081	mRNA	1409800	1416986	+
GWHAAZE00000081	exon	1409800	1409805	+
GWHAAZE00000081	exon	1409992	1410085	+
GWHAAZE00000081	exon	1410578	1410657	+
GWHAAZE00000081	exon	1410833	1410888	+
GWHAAZE00000081	exon	1410969	1411071	+
GWHAAZE00000081	exon	1411626	1411710	+
GWHAAZE00000081	exon	1412641	1412726	+
GWHAAZE00000081	exon	1414210	1414308	+
GWHAAZE00000081	exon	1415097	1415198	+
GWHAAZE00000081	exon	1416494	1416986	+
GWHAAZE00000081	CDS	1409800	1409805	+
GWHAAZE00000081	CDS	1409992	1410085	+
GWHAAZE00000081	CDS	1410578	1410657	+
GWHAAZE00000081	CDS	1410833	1410888	+
GWHAAZE00000081	CDS	1410969	1411071	+
GWHAAZE00000081	CDS	1411626	1411710	+
GWHAAZE00000081	CDS	1412641	1412726	+
GWHAAZE00000081	CDS	1414210	1414308	+
GWHAAZE00000081	CDS	1415097	1415198	+
GWHAAZE00000081	CDS	1416494	1416631	+
GWHAAZE00000081	three_prime_UTR	1416632	1416986	+

Transcript Sequence
>GWHTAAZE033053 ATGAAGGGAAAAGGAAGAGTTTTCTGTGCTGGTGGCGATGTTGCAGCTGTAGTCTGTGATATTAAGGAAGGTAGAGACTCGTTTCTTGCATTTCATATGTGTAATTGGAAATTAGGTGCAAAATATTTCTGGAAGGAATTCATCTTGAACTTTGTGATGGCAACATACAACAAGCCCCAGGAGGCGGAGCTGGTGCTTCAATACATGGTAGATTCTGAGTTGCAACAGAGAATTCGGTACTTGTATTGGAAGACTTACACCTTCTGGTTTGTCTTTCTAAAACCTTTCAACCTTAACCATATTGGCCTAGTTAAGTTCCCAATGCGAAACTCTGTCAAGGTTTTTGCAATGCCAGAAACGGCTTTGGGACTCTTCCCTGATGTAGGGGCCTCTTATTACTTATCAAGACTCCCTGGATTCTTCGGAGAATATGTTGGGCTTGTTGGTGCTAGGTTGGATGGTGCTGAGATGCTTGCATGTGGCCTTGCGACTCACTTTGTGCCTGCAGAGGAAATCGAGGCCAAAAACAGCAAGGATGATTGGATCTCTACAACCCTACAATCATTGAAGAAAGCATCCTCTATGAGTCTTAAAATTTCTCTTAGATCGATTAGAGAAGGGAGACTCCAAGGTGTTGGCCAATGCCTTGTGCGAGAGTACATAATGGTCTGTCATGTCATGAGAGGAGAAGTCAGCAAGGATTTCATTGAGTGGAATCCTTCTAAACTAGAACAAATCAACGATGAAATGGTTGACTGTTACTTCTCCAAGGTGGATGATGAAGAATGTGAAGATCTAAAACTCCCTCCCAGGTCAAACTTGCCTGCACATGCCATTGTAAAGCTCTAGTTTATCATTTAACAAGATACTGCAATTTGGACCGCCCCTCCTTGAATAATTCAATCAGGTAAAATTCTCAAGACATCCCATTTTGTGTTAGGTTGCCATATAAGTGAATACGGTTATTTCTAAGACTATCATAGGACGAATATTTAGGGCGAGAAATAAGAAATATTTATAATAAATTGCAATAGATATGATACACATGAATACATGATGTGTTAAAGGTTGGGCATTTACGGTTTTTAAGATCATTTGTTCACATTGCCATCATATCTACTTTGAATTTGCAATTAAACCCAGCATTTGCAATTGACCTGTAGGTCTGGTGTGTGTAATTTGTACTATTTAGGATTCGATTTGT

Network for GWHGAAZE033014

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16113.6	ECH_2	2	60	5.20E-07
PF16113.6	ECH_2	113	174	5.60E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05605	HIBCH	Metabolic pathways	map01100
		Carbon metabolism	map01200
		Propanoate metabolism	map00640
		Valine, leucine and isoleucine degradation	map00280
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0003860	molecular_function	3-hydroxyisobutyryl-CoA hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.050
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.012
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.161
	SRR3591713	Yellow flower	0.048
SRP173429	SRR8316895	Juvenile bud stage	2.185
	SRR8316896	Juvenile bud stage	2.391
	SRR8316897	Juvenile bud stage	0.643
	SRR8316894	Third green stage	1.108
	SRR8316900	Third green stage	1.755
	SRR8316901	Third green stage	2.205
	SRR8316898	Complete white stage	1.100
	SRR8316899	Complete white stage	3.084
	SRR8316903	Complete white stage	2.621
	SRR8316902	Silver flowering stage	1.521
	SRR8316904	Silver flowering stage	1.985
	SRR8316905	Silver flowering stage	1.094
	SRR8316906	Gold flowering stage	2.916
	SRR8316907	Gold flowering stage	3.069
	SRR8316908	Gold flowering stage	1.672
SRP132670	SRR6706286	Control	1.700
	SRR6706287	Light intensity 50%	1.698
	SRR6706288	Light intensity 20%	1.277
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.915
	CNS0095593	Slightly white alabastrum(diploid) 2	1.401
	CNS0095594	Slightly white alabastrum(diploid) 3	1.856
	CNS0095595	Whole white alabastrum(diploid) 2	2.757
	CNS0095596	Whole white alabastrum(diploid) 3	1.334
	CNS0095597	Whole white alabastrum(diploid) 4	1.255
	CNS0095598	Silvery flower (diploied) 1	2.460
	CNS0095599	Silvery flower (diploied) 2	2.095
	CNS0095600	Silvery flower (diploied) 3	1.313
	CNS0095601	Golden flower (diploid) 1	2.692
	CNS0095602	Golden flower (diploid) 2	1.180
	CNS0095603	Golden flower (diploid) 3	0.985
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.146
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.705
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.838
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.825
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.643
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.601
	CNS0095610	Silvery flower (tetraploid) 1	0.970
	CNS0095611	Silvery flower (tetraploid) 2	0.357
	CNS0095612	Silvery flower (tetraploid) 3	0.793
	CNS0095613	Golden flower (tetraploid) 1	0.833
	CNS0095614	Golden flower (tetraploid) 2	0.430
	CNS0095615	Golden flower (tetraploid) 3	0.492
CRA001975	CRR073297	Stem 1	1.460
	CRR073298	Stem 2	0.997
	CRR073299	Stem 3	0.230
	CRR073300	Leaf 1	0.771
	CRR073301	Leaf 2	1.310
	CRR073302	Leaf 3	0.096
	CRR073303	Juvenile bud 1	0.167
	CRR073304	Juvenile bud 2	0.043
	CRR073305	Juvenile bud 3	0.414
	CRR073306	Third green 1	0.220
	CRR073307	Third green 2	0.107
	CRR073308	Third green 3	0.121
	CRR073309	Second white 1	0.058
	CRR073310	Second white 2	0.284
	CRR073311	Second white 3	0.345
	CRR073312	Silver flowering 1	0.156
	CRR073313	Silver flowering 2	0.031
	CRR073314	Silver flowering 3	0.045
	CRR073315	Gold flowering 1	0.056
	CRR073316	Gold flowering 2	1.165
	CRR073317	Gold flowering 3	0.249
	CRR073318	Tawny withering 1	0.669
	CRR073319	Tawny withering 2	0.341
	CRR073320	Tawny withering 3	0.159