Gene detail

Detail information of GWHGAAZE033018

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010097720.1	1.359E-162	3-hydroxyisobutyryl-CoA hydrolase 1 [Morus notabilis]
COG	YP_458895.1	1E-53	enoyl-CoA hydratase/isomeras
Swissprot	tr\|Q9LKJ1\|HIBC1_ARATH	2E-151	3-hydroxyisobutyryl-CoA hydrolase 1
trEMBL	tr\|W9RDH3\|W9RDH3_9ROSA	5E-163	3-hydroxyisobutyryl-CoA hydrolase 1 {ECO:0000313\|EMBL:EXB70675.1}
TAIR10	AT5G65940.1	4E-122	beta-hydroxyisobutyryl-CoA hydrolase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000081	gene	1595821	1605087	+
GWHAAZE00000081	mRNA	1595821	1605087	+
GWHAAZE00000081	exon	1595821	1595941	+
GWHAAZE00000081	exon	1596461	1596540	+
GWHAAZE00000081	exon	1596682	1596765	+
GWHAAZE00000081	exon	1597468	1597552	+
GWHAAZE00000081	exon	1600221	1600306	+
GWHAAZE00000081	exon	1601539	1601612	+
GWHAAZE00000081	exon	1601888	1601948	+
GWHAAZE00000081	exon	1602200	1602298	+
GWHAAZE00000081	exon	1603083	1603184	+
GWHAAZE00000081	exon	1604474	1605087	+
GWHAAZE00000081	CDS	1595821	1595941	+
GWHAAZE00000081	CDS	1596461	1596540	+
GWHAAZE00000081	CDS	1596682	1596765	+
GWHAAZE00000081	CDS	1597468	1597552	+
GWHAAZE00000081	CDS	1600221	1600306	+
GWHAAZE00000081	CDS	1601539	1601612	+
GWHAAZE00000081	CDS	1601888	1601948	+
GWHAAZE00000081	CDS	1602200	1602298	+
GWHAAZE00000081	CDS	1603083	1603184	+
GWHAAZE00000081	CDS	1604474	1604611	+
GWHAAZE00000081	three_prime_UTR	1604612	1605087	+

Transcript Sequence
>GWHTAAZE033057 CTCCTCGGGCTTTTCACCTTTCTGACTTGCGTGTTGATTTTGGATTTTATGGTTGTAGGGAAAAGGAAGAGCTTCTGTGCTGGTGGCGATGTTGCAGCTGTAGTCCGTGATATTAAGGAAGGTAATTGGAAATTAGGTGCAAAATATTTCTGGAAGGAATTCATCTTGAACTATGTGATGGCGACATACAACGAGCCCCAGGTTTCTATTCTGTATGGAATTGTCATGGGAGGGGGTGCTGGTGCTTCAATAGATGGTAGATTCCGAGTTGCAACAGAGAATTCGGTTTTTGCAATGCCAGAAACGGCTTTGGGACTCTTCCCTGATGTAGGGGCCTCTTATTTCTTATCAAGACTCCCTGGATTCTTCGGAGAATATGTTGGTCTTGCTGGTGCTAGGTTGGATGGTGCTGAGATGCTTGCATGTGGCCTTGCGACTCACTTTGTGCCCGCAGAGATTCGAGTGATCCCTGGCATTATTAGTGAATTCTCTCAGTATCCTAATTTGAAAGAGAAGAGTGCTTATTACCGGATGGATATTATTGATAGGTGTTTCTCTCGAAGAACGGTTGAAGATATTTTATCTGCCTTAGAAATCGAGGCCAAAAACAGCAAGGATGATTGGATCTCTACAACCCTACAATCATTGAAGAAAGCATCCCCTATGAGTCTTAAAATTTCTCTTAGATCGATTAGAGAAGGGAGACTCCAAGGTGTTGGCCAATGCCTTGTGCAAGAGTACAGAATGGTTTGTCATGTCATGAGAGGAGAAGTCAGCAAGGATTTCATTGAGTGGAATCCTTCTAAACTAGAACAAATCAGCGATGAAATGGTTGACTGTTACTTCTCCAAGGTGGATGATGAAGAATGGGAAGATCTAAAACTCCCTCCCAGGTCAAACTTGCCTGCACATGCCATTGCAAAGCTCTAGTTTATCATTTAACAAGATACTGCAATTTGGACCGCCCCTCCTTGAATAATTCAATCAGGTAAAATTCTCAAGACATCCCATTTTGTTTTAGGTTGCCATATAAGTGAATTTGGTTATTTCTAAGACTATCATAGGACGAATATTTAGGGCGACAAATAAGAAATATTTAGAATAAATTGCAATAGATATGATACACATGAATACATAACGTGTTAAAGGTTGAGCATTTGCGGTTTTTAAGATCATTTGTTCACATTGCCATCATATCTAATTTGAATTTGCAATTACACCCAGCGTTTGCACTATTTAGGATTTGATTTGTGATGTGATTCGCAATTTGTAGCCTAATTGATGCGAATCGTTTAATCTAATACGGACAGGATTTTATCATAATATTTTTACCAAACCTATCTAATATAAAATATTTGAATTTGGGTCCATGGTATTCTAATCACATTCCTTGAAAGTTTCTTCAC

Network for GWHGAAZE033018

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0154

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16113.6	ECH_2	19	282	3.20E-78

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05605	HIBCH	Metabolic pathways	map01100
		Carbon metabolism	map01200
		Propanoate metabolism	map00640
		Valine, leucine and isoleucine degradation	map00280
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0003860	molecular_function	3-hydroxyisobutyryl-CoA hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.029
	SRR3591708	Shoot apex	0.051
	SRR3591709	Stem	0.496
	SRR3591710	White floral bud	0.150
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	1.076
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	5.095
	SRR8316896	Juvenile bud stage	9.014
	SRR8316897	Juvenile bud stage	1.870
	SRR8316894	Third green stage	3.086
	SRR8316900	Third green stage	6.291
	SRR8316901	Third green stage	7.747
	SRR8316898	Complete white stage	2.366
	SRR8316899	Complete white stage	5.909
	SRR8316903	Complete white stage	6.846
	SRR8316902	Silver flowering stage	3.974
	SRR8316904	Silver flowering stage	6.357
	SRR8316905	Silver flowering stage	3.152
	SRR8316906	Gold flowering stage	7.470
	SRR8316907	Gold flowering stage	9.044
	SRR8316908	Gold flowering stage	2.924
SRP132670	SRR6706286	Control	3.134
	SRR6706287	Light intensity 50%	4.152
	SRR6706288	Light intensity 20%	4.335
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.915
	CNS0095593	Slightly white alabastrum(diploid) 2	7.288
	CNS0095594	Slightly white alabastrum(diploid) 3	10.669
	CNS0095595	Whole white alabastrum(diploid) 2	6.140
	CNS0095596	Whole white alabastrum(diploid) 3	6.471
	CNS0095597	Whole white alabastrum(diploid) 4	5.957
	CNS0095598	Silvery flower (diploied) 1	12.374
	CNS0095599	Silvery flower (diploied) 2	8.219
	CNS0095600	Silvery flower (diploied) 3	3.770
	CNS0095601	Golden flower (diploid) 1	8.199
	CNS0095602	Golden flower (diploid) 2	4.094
	CNS0095603	Golden flower (diploid) 3	4.389
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.307
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.002
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.374
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.725
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.618
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.310
	CNS0095610	Silvery flower (tetraploid) 1	9.791
	CNS0095611	Silvery flower (tetraploid) 2	5.232
	CNS0095612	Silvery flower (tetraploid) 3	9.753
	CNS0095613	Golden flower (tetraploid) 1	8.256
	CNS0095614	Golden flower (tetraploid) 2	8.115
	CNS0095615	Golden flower (tetraploid) 3	5.854
CRA001975	CRR073297	Stem 1	4.576
	CRR073298	Stem 2	4.159
	CRR073299	Stem 3	0.467
	CRR073300	Leaf 1	5.157
	CRR073301	Leaf 2	3.559
	CRR073302	Leaf 3	0.623
	CRR073303	Juvenile bud 1	0.651
	CRR073304	Juvenile bud 2	0.229
	CRR073305	Juvenile bud 3	0.868
	CRR073306	Third green 1	0.111
	CRR073307	Third green 2	0.096
	CRR073308	Third green 3	0.163
	CRR073309	Second white 1	0.087
	CRR073310	Second white 2	0.503
	CRR073311	Second white 3	0.501
	CRR073312	Silver flowering 1	0.041
	CRR073313	Silver flowering 2	0.038
	CRR073314	Silver flowering 3	0.142
	CRR073315	Gold flowering 1	0.139
	CRR073316	Gold flowering 2	0.486
	CRR073317	Gold flowering 3	0.019
	CRR073318	Tawny withering 1	1.256
	CRR073319	Tawny withering 2	4.550
	CRR073320	Tawny withering 3	1.056