Gene detail

Detail information of GWHGAAZE033039

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009625756.1	5.95424E-70	PREDICTED: ubiquitin carboxyl-terminal hydrolase 25 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9FPS2\|UBP25_ARATH	7E-42	Ubiquitin carboxyl-terminal hydrolase 25
trEMBL	tr\|K4CGI4\|K4CGI4_SOLLC	2E-63	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR10	AT3G14400.1	5E-38	ubiquitin-specific protease 25

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000087	gene	11587	13038	-
GWHAAZE00000087	mRNA	11587	13038	-
GWHAAZE00000087	exon	12954	13038	-
GWHAAZE00000087	exon	12494	12624	-
GWHAAZE00000087	exon	11587	12402	-
GWHAAZE00000087	CDS	12954	13038	-
GWHAAZE00000087	CDS	12494	12624	-
GWHAAZE00000087	CDS	11587	12402	-

Transcript Sequence
>GWHTAAZE033078 ATGCCTACAAGAATGAACATGGCTGGAGGCCGCCAAGACTCCTGGGTGCCTTGTCGGAGACTTTTCGAGGTCATGGTGGTCAGAGAGCATTGCTCTATTAACGATTTGATTGATCTTTGGCTGGTGCAGGATTTATATCCAGAGTACGATCTTTTTGCTACCATTGTGCATTCTGGCTTCTCGCCAGATTCTGGACACTATTATGCATACATCAAGGATGCTATGGGCCGTTGGTATTGCTGCAACGATTCTTATGTTTCACTTTCAACCCTGCAGGAGGTATTGTCGGAGAAGGTTTATATCCTTTTCTTTTCTCGTACCAAACAGAGACCAGTACCTGCCAATACTGCTATGGCTACCAATGGAACAAAGTCGTGTATTTCCAATGGCAGTGATACATCCAGAATCGCAAAGGCAGTTCCTCCATTAAACTCGGTTAGTACTACACAGTTTGTTAACCATCCTTCTGAGAAGGATAATTCGCCCACTTCTAAGGTTGATACAGTGACATCAACTCCGAAGATCAAGTTAGGTAGCTTTGGTATTGCTGGTATGAAAAAGCCTCCTTCAAATGGCAGCGTAAAAATCGTTGTTCATAAAAGAGAATCCAGCGAAAATAATGGAGATGTAAAAGCCTTGAATGGTACGGAGAAAAGTGAGAGCAAAATGGCGTCATTAAAGGATTGCAATGGTGTTTGCAAAACTAAACCAGTTGATGGTGAAAAAACCCAGTCACGTCCCTTTGCATATGGGAATGGTAAAAATCAAGGCATCAAGGTCAATTCATTAGTGACAGATTGCTATGAGAATAATGGTACAAGAAACACAATGGCGTCGTCAAGAGGTCCCAACCACCAGGAATTGCAAAATGGTAAAAGCCAGAGCTTGAAGGTCAATTCCTTAGTAACAGAGCGGTATGAGAACAATGGTACTAGAAACACAATGGCATCGGAAGAGGTCCCAACTACCAGGAATTGCAAAATGGTAGTGTTAATTGCCTCTCTGGTAACTCTGGCTCCAAAAGAAAATTAG

Network for GWHGAAZE033039

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00443.30	UCH	47	104	3.00E-14

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016579	biological_process	protein deubiquitination
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.849
	SRR3591706	second leaf	8.161
	SRR3591707	mature leaf	8.222
	SRR3591708	Shoot apex	9.103
	SRR3591709	Stem	8.646
	SRR3591710	White floral bud	13.332
	SRR3591711	White flower	11.693
	SRR3591712	Green floral bud	14.655
	SRR3591713	Yellow flower	11.880
SRP173429	SRR8316895	Juvenile bud stage	5.426
	SRR8316896	Juvenile bud stage	5.575
	SRR8316897	Juvenile bud stage	5.411
	SRR8316894	Third green stage	3.277
	SRR8316900	Third green stage	6.514
	SRR8316901	Third green stage	7.394
	SRR8316898	Complete white stage	2.235
	SRR8316899	Complete white stage	9.153
	SRR8316903	Complete white stage	5.486
	SRR8316902	Silver flowering stage	3.812
	SRR8316904	Silver flowering stage	4.303
	SRR8316905	Silver flowering stage	1.936
	SRR8316906	Gold flowering stage	7.299
	SRR8316907	Gold flowering stage	6.712
	SRR8316908	Gold flowering stage	12.471
SRP132670	SRR6706286	Control	0.807
	SRR6706287	Light intensity 50%	1.112
	SRR6706288	Light intensity 20%	1.171
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.142
	CNS0095593	Slightly white alabastrum(diploid) 2	4.217
	CNS0095594	Slightly white alabastrum(diploid) 3	6.116
	CNS0095595	Whole white alabastrum(diploid) 2	5.022
	CNS0095596	Whole white alabastrum(diploid) 3	3.334
	CNS0095597	Whole white alabastrum(diploid) 4	4.184
	CNS0095598	Silvery flower (diploied) 1	5.784
	CNS0095599	Silvery flower (diploied) 2	3.501
	CNS0095600	Silvery flower (diploied) 3	5.559
	CNS0095601	Golden flower (diploid) 1	3.431
	CNS0095602	Golden flower (diploid) 2	7.365
	CNS0095603	Golden flower (diploid) 3	7.753
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.124
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.221
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.472
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.116
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.159
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.149
	CNS0095610	Silvery flower (tetraploid) 1	9.758
	CNS0095611	Silvery flower (tetraploid) 2	8.766
	CNS0095612	Silvery flower (tetraploid) 3	11.347
	CNS0095613	Golden flower (tetraploid) 1	6.117
	CNS0095614	Golden flower (tetraploid) 2	7.992
	CNS0095615	Golden flower (tetraploid) 3	10.600
CRA001975	CRR073297	Stem 1	2.782
	CRR073298	Stem 2	3.109
	CRR073299	Stem 3	3.559
	CRR073300	Leaf 1	3.640
	CRR073301	Leaf 2	2.160
	CRR073302	Leaf 3	2.446
	CRR073303	Juvenile bud 1	2.340
	CRR073304	Juvenile bud 2	0.987
	CRR073305	Juvenile bud 3	2.825
	CRR073306	Third green 1	0.801
	CRR073307	Third green 2	0.631
	CRR073308	Third green 3	0.557
	CRR073309	Second white 1	1.333
	CRR073310	Second white 2	1.559
	CRR073311	Second white 3	1.348
	CRR073312	Silver flowering 1	1.691
	CRR073313	Silver flowering 2	1.385
	CRR073314	Silver flowering 3	1.537
	CRR073315	Gold flowering 1	2.354
	CRR073316	Gold flowering 2	3.970
	CRR073317	Gold flowering 3	1.368
	CRR073318	Tawny withering 1	3.155
	CRR073319	Tawny withering 2	3.234
	CRR073320	Tawny withering 3	2.399