Detail information of GWHGAAZE033040


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011029539.11.9765E-156PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
Swissprottr|Q9FPS2|UBP25_ARATH3E-145Ubiquitin carboxyl-terminal hydrolase 25
trEMBLtr|M1CN55|M1CN55_SOLTU9E-156Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}
TAIR10AT3G14400.15E-114ubiquitin-specific protease 25

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000087gene1509516958-
GWHAAZE00000087mRNA1509516958-
GWHAAZE00000087exon1509515217-
GWHAAZE00000087exon1560715682-
GWHAAZE00000087exon1577116290-
GWHAAZE00000087exon1677516958-
GWHAAZE00000087CDS1677516958-
GWHAAZE00000087CDS1577116290-
GWHAAZE00000087CDS1560715682-
GWHAAZE00000087CDS1509515217-
Transcript Sequence

Network for GWHGAAZE033040

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00443.30UCH262912.20E-26
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUSP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006511biological_processubiquitin-dependent protein catabolic process
GO:0016579biological_processprotein deubiquitination
GO:0036459molecular_functionthiol-dependent ubiquitinyl hydrolase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.639
SRR3591706second leaf7.214
SRR3591707mature leaf4.959
SRR3591708Shoot apex6.337
SRR3591709Stem4.217
SRR3591710White floral bud8.614
SRR3591711White flower10.567
SRR3591712Green floral bud9.201
SRR3591713Yellow flower6.358
SRP173429 SRR8316895Juvenile bud stage 4.997
SRR8316896Juvenile bud stage 5.834
SRR8316897Juvenile bud stage 4.442
SRR8316894Third green stage 3.664
SRR8316900Third green stage 9.980
SRR8316901Third green stage 8.919
SRR8316898Complete white stage 3.504
SRR8316899Complete white stage 11.006
SRR8316903Complete white stage 7.776
SRR8316902Silver flowering stage3.856
SRR8316904Silver flowering stage5.381
SRR8316905Silver flowering stage2.640
SRR8316906Gold flowering stage 10.652
SRR8316907Gold flowering stage 10.836
SRR8316908Gold flowering stage 10.797
SRP132670SRR6706286Control6.150
SRR6706287Light intensity 50%5.609
SRR6706288Light intensity 20%6.311
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.621
CNS0095593Slightly white alabastrum(diploid) 27.428
CNS0095594Slightly white alabastrum(diploid) 310.134
CNS0095595Whole white alabastrum(diploid) 27.731
CNS0095596Whole white alabastrum(diploid) 37.392
CNS0095597Whole white alabastrum(diploid) 45.482
CNS0095598Silvery flower (diploied) 19.100
CNS0095599Silvery flower (diploied) 27.027
CNS0095600Silvery flower (diploied) 38.024
CNS0095601Golden flower (diploid) 13.028
CNS0095602Golden flower (diploid) 29.712
CNS0095603Golden flower (diploid) 38.821
CNS0095604Slightly white alabastrum(tetraploid) 18.139
CNS0095605Slightly white alabastrum(tetraploid) 27.906
CNS0095606Slightly white alabastrum(tetraploid) 39.867
CNS0095607Whole white alabastrum(tetraploid) 15.594
CNS0095608Whole white alabastrum(tetraploid) 25.910
CNS0095609Whole white alabastrum(tetraploid) 35.600
CNS0095610Silvery flower (tetraploid) 113.508
CNS0095611Silvery flower (tetraploid) 26.744
CNS0095612Silvery flower (tetraploid) 38.142
CNS0095613Golden flower (tetraploid) 17.316
CNS0095614Golden flower (tetraploid) 211.303
CNS0095615Golden flower (tetraploid) 39.021
CRA001975CRR073297Stem 16.987
CRR073298Stem 26.180
CRR073299Stem 36.775
CRR073300Leaf 17.513
CRR073301Leaf 24.702
CRR073302Leaf 36.682
CRR073303Juvenile bud 15.147
CRR073304Juvenile bud 23.090
CRR073305Juvenile bud 35.234
CRR073306Third green 13.141
CRR073307Third green 21.208
CRR073308Third green 32.266
CRR073309Second white 11.878
CRR073310Second white 24.277
CRR073311Second white 33.366
CRR073312Silver flowering 11.873
CRR073313Silver flowering 21.484
CRR073314Silver flowering 32.403
CRR073315Gold flowering 13.351
CRR073316Gold flowering 24.513
CRR073317Gold flowering 33.270
CRR073318Tawny withering 15.062
CRR073319Tawny withering 25.482
CRR073320Tawny withering 35.476