Detail information of GWHGAAZE033042


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP18793.16.22681E-54unnamed protein product [Coffea canephora]
COGYP_004180201.10.0000001serine/threonine protein kinase
Swissprottr|Q0V7T5|Y1864_ARATH8E-39Probable receptor-like protein kinase At1g80640 (Precursor)
trEMBLtr|A0A068VGI3|A0A068VGI3_COFCA2E-54Coffea canephora DH200=94 genomic scaffold, scaffold_288 {ECO:0000313|EMBL:CDP18793.1}
TAIR10AT5G11020.16E-36Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000087gene4766148002-
GWHAAZE00000087mRNA4766148002-
GWHAAZE00000087exon4766148002-
GWHAAZE00000087CDS4766148002-
Transcript Sequence

Network for GWHGAAZE033042

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07714.18PK_Tyr_Ser-Thr51102.80E-17
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_RLCK-X

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE033042.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30123456789101112Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.830
SRR3591706second leaf3.190
SRR3591707mature leaf3.628
SRR3591708Shoot apex4.509
SRR3591709Stem3.407
SRR3591710White floral bud0.097
SRR3591711White flower0.428
SRR3591712Green floral bud0.459
SRR3591713Yellow flower0.233
SRP173429 SRR8316895Juvenile bud stage 2.208
SRR8316896Juvenile bud stage 2.473
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 2.950
SRR8316900Third green stage 4.954
SRR8316901Third green stage 6.358
SRR8316898Complete white stage 2.794
SRR8316899Complete white stage 7.936
SRR8316903Complete white stage 5.538
SRR8316902Silver flowering stage1.983
SRR8316904Silver flowering stage6.430
SRR8316905Silver flowering stage1.072
SRR8316906Gold flowering stage 6.461
SRR8316907Gold flowering stage 5.573
SRR8316908Gold flowering stage 1.521
SRP132670SRR6706286Control0.524
SRR6706287Light intensity 50%0.440
SRR6706288Light intensity 20%0.339
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.328
CNS0095593Slightly white alabastrum(diploid) 25.456
CNS0095594Slightly white alabastrum(diploid) 33.877
CNS0095595Whole white alabastrum(diploid) 27.236
CNS0095596Whole white alabastrum(diploid) 36.249
CNS0095597Whole white alabastrum(diploid) 410.547
CNS0095598Silvery flower (diploied) 12.320
CNS0095599Silvery flower (diploied) 22.327
CNS0095600Silvery flower (diploied) 311.033
CNS0095601Golden flower (diploid) 16.445
CNS0095602Golden flower (diploid) 26.031
CNS0095603Golden flower (diploid) 35.921
CNS0095604Slightly white alabastrum(tetraploid) 17.914
CNS0095605Slightly white alabastrum(tetraploid) 26.484
CNS0095606Slightly white alabastrum(tetraploid) 37.447
CNS0095607Whole white alabastrum(tetraploid) 110.832
CNS0095608Whole white alabastrum(tetraploid) 29.905
CNS0095609Whole white alabastrum(tetraploid) 36.624
CNS0095610Silvery flower (tetraploid) 15.837
CNS0095611Silvery flower (tetraploid) 25.498
CNS0095612Silvery flower (tetraploid) 35.849
CNS0095613Golden flower (tetraploid) 16.257
CNS0095614Golden flower (tetraploid) 24.764
CNS0095615Golden flower (tetraploid) 37.015
CRA001975CRR073297Stem 12.084
CRR073298Stem 21.703
CRR073299Stem 30.564
CRR073300Leaf 11.784
CRR073301Leaf 21.256
CRR073302Leaf 30.743
CRR073303Juvenile bud 10.889
CRR073304Juvenile bud 20.121
CRR073305Juvenile bud 31.657
CRR073306Third green 10.326
CRR073307Third green 20.770
CRR073308Third green 30.993
CRR073309Second white 10.455
CRR073310Second white 20.575
CRR073311Second white 31.777
CRR073312Silver flowering 10.468
CRR073313Silver flowering 20.715
CRR073314Silver flowering 31.522
CRR073315Gold flowering 12.202
CRR073316Gold flowering 23.482
CRR073317Gold flowering 34.525
CRR073318Tawny withering 13.589
CRR073319Tawny withering 23.286
CRR073320Tawny withering 32.511