Detail information of GWHGAAZE033079


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009794340.10PREDICTED: UDP-glucose 6-dehydrogenase 3 [Nicotiana sylvestris]
COGYP_003548756.10nucleotide sugar dehydrogenase
Swissprottr|Q96558|UGDH1_SOYBN0UDP-glucose 6-dehydrogenase 1
trEMBLtr|A0A078DB78|A0A078DB78_BRANA0BnaA02g02640D protein {ECO:0000313|EMBL:CDX85549.1}
TAIR10AT5G15490.10UDP-glucose 6-dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene419315420769-
GWHAAZE00000094mRNA419315420769-
GWHAAZE00000094exon419315420769-
GWHAAZE00000094CDS419315420769-
Transcript Sequence

Network for GWHGAAZE033079

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03721.15UDPG_MGDP_dh_N31853.70E-66
PF00984.20UDPG_MGDP_dh2103045.10E-32
PF03720.16UDPG_MGDP_dh_C3284513.80E-36
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00012UGDH, ugd Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Ascorbate and aldarate metabolismmap00053
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287molecular_functionNAD binding
GO:0003979molecular_functionUDP-glucose 6-dehydrogenase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1035.732
SRR3591706second leaf357.066
SRR3591707mature leaf145.447
SRR3591708Shoot apex252.171
SRR3591709Stem808.426
SRR3591710White floral bud324.598
SRR3591711White flower346.927
SRR3591712Green floral bud429.536
SRR3591713Yellow flower222.208
SRP173429 SRR8316895Juvenile bud stage 488.080
SRR8316896Juvenile bud stage 471.726
SRR8316897Juvenile bud stage 347.535
SRR8316894Third green stage 146.166
SRR8316900Third green stage 368.443
SRR8316901Third green stage 468.176
SRR8316898Complete white stage 134.227
SRR8316899Complete white stage 625.338
SRR8316903Complete white stage 198.790
SRR8316902Silver flowering stage99.629
SRR8316904Silver flowering stage98.522
SRR8316905Silver flowering stage49.058
SRR8316906Gold flowering stage 149.671
SRR8316907Gold flowering stage 177.716
SRR8316908Gold flowering stage 186.313
SRP132670SRR6706286Control341.671
SRR6706287Light intensity 50%412.060
SRR6706288Light intensity 20%446.056
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1421.851
CNS0095593Slightly white alabastrum(diploid) 2540.004
CNS0095594Slightly white alabastrum(diploid) 3412.554
CNS0095595Whole white alabastrum(diploid) 2417.295
CNS0095596Whole white alabastrum(diploid) 3194.014
CNS0095597Whole white alabastrum(diploid) 4317.990
CNS0095598Silvery flower (diploied) 1532.188
CNS0095599Silvery flower (diploied) 2555.902
CNS0095600Silvery flower (diploied) 3339.697
CNS0095601Golden flower (diploid) 1426.338
CNS0095602Golden flower (diploid) 2496.427
CNS0095603Golden flower (diploid) 3479.692
CNS0095604Slightly white alabastrum(tetraploid) 1219.356
CNS0095605Slightly white alabastrum(tetraploid) 2169.279
CNS0095606Slightly white alabastrum(tetraploid) 3421.776
CNS0095607Whole white alabastrum(tetraploid) 1141.171
CNS0095608Whole white alabastrum(tetraploid) 2130.452
CNS0095609Whole white alabastrum(tetraploid) 3304.378
CNS0095610Silvery flower (tetraploid) 1137.592
CNS0095611Silvery flower (tetraploid) 291.905
CNS0095612Silvery flower (tetraploid) 3144.178
CNS0095613Golden flower (tetraploid) 182.108
CNS0095614Golden flower (tetraploid) 2119.517
CNS0095615Golden flower (tetraploid) 378.410
CRA001975CRR073297Stem 1453.608
CRR073298Stem 2434.387
CRR073299Stem 3526.462
CRR073300Leaf 1682.472
CRR073301Leaf 2800.736
CRR073302Leaf 3677.103
CRR073303Juvenile bud 1818.877
CRR073304Juvenile bud 2870.275
CRR073305Juvenile bud 3984.595
CRR073306Third green 1728.723
CRR073307Third green 2697.163
CRR073308Third green 3645.736
CRR073309Second white 1338.490
CRR073310Second white 2229.754
CRR073311Second white 3216.297
CRR073312Silver flowering 1435.959
CRR073313Silver flowering 2420.131
CRR073314Silver flowering 3330.664
CRR073315Gold flowering 1380.078
CRR073316Gold flowering 2641.950
CRR073317Gold flowering 3407.088
CRR073318Tawny withering 11050.251
CRR073319Tawny withering 2947.059
CRR073320Tawny withering 31485.902