Detail information of GWHGAAZE033084


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010661138.11.08151E-58PREDICTED: nipped-B-like protein isoform X4 [Vitis vinifera]
trEMBLtr|A0A061EF60|A0A061EF60_THECC3E-55Pearli, putative isoform 3 {ECO:0000313|EMBL:EOY03630.1}
TAIR10AT5G15540.22E-31PHD finger family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene469391470879-
GWHAAZE00000094mRNA469391470879-
GWHAAZE00000094exon469391469686-
GWHAAZE00000094exon469769469865-
GWHAAZE00000094exon469939470075-
GWHAAZE00000094exon470876470879-
GWHAAZE00000094CDS470876470879-
GWHAAZE00000094CDS469939470075-
GWHAAZE00000094CDS469769469865-
GWHAAZE00000094CDS469391469686-
Transcript Sequence

Network for GWHGAAZE033084

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06672SCC2, NIPBL Cell cycle - yeast map04111

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.243
SRR3591706second leaf7.113
SRR3591707mature leaf5.971
SRR3591708Shoot apex6.797
SRR3591709Stem6.137
SRR3591710White floral bud5.992
SRR3591711White flower13.749
SRR3591712Green floral bud4.591
SRR3591713Yellow flower7.720
SRP173429 SRR8316895Juvenile bud stage 3.064
SRR8316896Juvenile bud stage 3.441
SRR8316897Juvenile bud stage 1.955
SRR8316894Third green stage 2.451
SRR8316900Third green stage 3.899
SRR8316901Third green stage 3.045
SRR8316898Complete white stage 1.596
SRR8316899Complete white stage 5.701
SRR8316903Complete white stage 4.669
SRR8316902Silver flowering stage1.812
SRR8316904Silver flowering stage4.657
SRR8316905Silver flowering stage1.816
SRR8316906Gold flowering stage 5.766
SRR8316907Gold flowering stage 4.520
SRR8316908Gold flowering stage 3.767
SRP132670SRR6706286Control2.941
SRR6706287Light intensity 50%2.989
SRR6706288Light intensity 20%3.518
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.398
CNS0095593Slightly white alabastrum(diploid) 20.165
CNS0095594Slightly white alabastrum(diploid) 30.869
CNS0095595Whole white alabastrum(diploid) 21.056
CNS0095596Whole white alabastrum(diploid) 30.230
CNS0095597Whole white alabastrum(diploid) 40.911
CNS0095598Silvery flower (diploied) 13.844
CNS0095599Silvery flower (diploied) 21.664
CNS0095600Silvery flower (diploied) 37.748
CNS0095601Golden flower (diploid) 12.043
CNS0095602Golden flower (diploid) 28.155
CNS0095603Golden flower (diploid) 36.562
CNS0095604Slightly white alabastrum(tetraploid) 10.835
CNS0095605Slightly white alabastrum(tetraploid) 20.318
CNS0095606Slightly white alabastrum(tetraploid) 33.706
CNS0095607Whole white alabastrum(tetraploid) 10.247
CNS0095608Whole white alabastrum(tetraploid) 20.287
CNS0095609Whole white alabastrum(tetraploid) 31.391
CNS0095610Silvery flower (tetraploid) 15.590
CNS0095611Silvery flower (tetraploid) 26.270
CNS0095612Silvery flower (tetraploid) 34.086
CNS0095613Golden flower (tetraploid) 11.097
CNS0095614Golden flower (tetraploid) 23.574
CNS0095615Golden flower (tetraploid) 36.738
CRA001975CRR073297Stem 12.519
CRR073298Stem 23.160
CRR073299Stem 32.284
CRR073300Leaf 13.376
CRR073301Leaf 21.630
CRR073302Leaf 30.733
CRR073303Juvenile bud 10.909
CRR073304Juvenile bud 20.129
CRR073305Juvenile bud 31.967
CRR073306Third green 10.671
CRR073307Third green 20.091
CRR073308Third green 30.510
CRR073309Second white 10.614
CRR073310Second white 20.482
CRR073311Second white 32.721
CRR073312Silver flowering 10.584
CRR073313Silver flowering 21.276
CRR073314Silver flowering 32.380
CRR073315Gold flowering 11.894
CRR073316Gold flowering 21.427
CRR073317Gold flowering 31.156
CRR073318Tawny withering 11.216
CRR073319Tawny withering 20.808
CRR073320Tawny withering 30.767