Gene detail

Detail information of GWHGAAZE033095

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009760598.1	2.0649E-129	PREDICTED: 60S ribosomal protein L7-2-like [Nicotiana sylvestris]
COG	YP_001013496.1	5E-10	50S ribosomal protein L30P
Swissprot	tr\|Q9SAI5\|RL71_ARATH	2E-85	60S ribosomal protein L7-1
trEMBL	tr\|K4C815\|K4C815_SOLLC	7E-129	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g068400.2.1}
TAIR10	AT1G80750.1	2E-68	Ribosomal protein L30/L7 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	680582	684460	-
GWHAAZE00000094	mRNA	680582	684460	-
GWHAAZE00000094	exon	680582	680797	-
GWHAAZE00000094	exon	680893	680995	-
GWHAAZE00000094	exon	682125	682262	-
GWHAAZE00000094	exon	682345	682433	-
GWHAAZE00000094	exon	683625	683665	-
GWHAAZE00000094	exon	684175	684190	-
GWHAAZE00000094	exon	684278	684460	-
GWHAAZE00000094	CDS	684278	684460	-
GWHAAZE00000094	CDS	684175	684190	-
GWHAAZE00000094	CDS	683625	683665	-
GWHAAZE00000094	CDS	682345	682433	-
GWHAAZE00000094	CDS	682125	682262	-
GWHAAZE00000094	CDS	680893	680995	-
GWHAAZE00000094	CDS	680582	680797	-

Transcript Sequence
>GWHTAAZE033134 ATGGCTGATGAAGAGCCGAAGCCTCTTGCCTATGTTCCAGAGATAATATTGAAGAAAAGGAAAAATAATGAAGAGTGGGCAATTAGAAGGAAACAGCAGTTGGAGCAGAGGGTGAGGAAATCAAAGGAAGATAATTCTTTCTTTAAGAGGCCTGAGCAGTTCATCCAAGAGTTCCGTGACAAGGGGCTGAGTTTGCATAAGGCGGAGGATGAGGATGAGGGTGAGGAAGACGAAGCTGCAGAGTTGGACCTTGTACAGATGAAACACAGGGGAAAACGCCGAAGACCAGAATTAGAATCAAAGCTCCTTTTTGTCATGCGCATACAAGGAAAAAATGACATGCATCCAAAAACCAGGAAGATTTTATATTCTTTGAGGCTGAGGAGAAGGTTCAATGGCGTCTTTGTGAAGGCAAATGAAAGGATACTGGAAATGCTGCAGAAAGTGGAGCCTTTTGTGACATACGGATATCCTAATCTCAAGAGTGTGAATGACCTGATATACAAGAAAGGCTTGGCCAAAATTAACAAGCAGAGAGTTCCTTTAACAGACAATAACATTATTGAACAGGCAATGGGTCAGCATGGAATCCTATGCATAGAAGACATAGTAAACGAGATTGCTAATGTCGGTCCGCATTTTAAGGAAATCAACAGTTTTCTTTGCCCCTTTACACTGAACAAACCAGAGAAAGCGTTGCAAGGTAAGAAAAGGCGGTTTGAGGATGGGGGAGATGCTGGAAATCGCCAGCATCACATCAATGAGTTGATTAGTAAGATGAATTAG

Network for GWHGAAZE033095

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08079.13	Ribosomal_L30_N	12	61	1.70E-08
PF00327.21	Ribosomal_L30	103	153	3.70E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02937	RP-L7e, RPL7	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0022625	cellular_component	cytosolic large ribosomal subunit
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	52.662
	SRR3591706	second leaf	29.187
	SRR3591707	mature leaf	41.768
	SRR3591708	Shoot apex	90.603
	SRR3591709	Stem	73.664
	SRR3591710	White floral bud	36.090
	SRR3591711	White flower	67.548
	SRR3591712	Green floral bud	63.506
	SRR3591713	Yellow flower	47.831
SRP173429	SRR8316895	Juvenile bud stage	72.968
	SRR8316896	Juvenile bud stage	92.693
	SRR8316897	Juvenile bud stage	43.599
	SRR8316894	Third green stage	41.901
	SRR8316900	Third green stage	104.645
	SRR8316901	Third green stage	102.950
	SRR8316898	Complete white stage	19.482
	SRR8316899	Complete white stage	133.222
	SRR8316903	Complete white stage	35.953
	SRR8316902	Silver flowering stage	30.989
	SRR8316904	Silver flowering stage	34.916
	SRR8316905	Silver flowering stage	15.796
	SRR8316906	Gold flowering stage	59.222
	SRR8316907	Gold flowering stage	62.005
	SRR8316908	Gold flowering stage	61.615
SRP132670	SRR6706286	Control	62.954
	SRR6706287	Light intensity 50%	57.332
	SRR6706288	Light intensity 20%	63.792
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	115.389
	CNS0095593	Slightly white alabastrum(diploid) 2	120.170
	CNS0095594	Slightly white alabastrum(diploid) 3	113.179
	CNS0095595	Whole white alabastrum(diploid) 2	80.347
	CNS0095596	Whole white alabastrum(diploid) 3	81.141
	CNS0095597	Whole white alabastrum(diploid) 4	74.903
	CNS0095598	Silvery flower (diploied) 1	72.294
	CNS0095599	Silvery flower (diploied) 2	67.287
	CNS0095600	Silvery flower (diploied) 3	39.995
	CNS0095601	Golden flower (diploid) 1	57.538
	CNS0095602	Golden flower (diploid) 2	39.724
	CNS0095603	Golden flower (diploid) 3	44.627
	CNS0095604	Slightly white alabastrum(tetraploid) 1	50.067
	CNS0095605	Slightly white alabastrum(tetraploid) 2	46.226
	CNS0095606	Slightly white alabastrum(tetraploid) 3	68.012
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.656
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.568
	CNS0095609	Whole white alabastrum(tetraploid) 3	45.903
	CNS0095610	Silvery flower (tetraploid) 1	56.201
	CNS0095611	Silvery flower (tetraploid) 2	37.140
	CNS0095612	Silvery flower (tetraploid) 3	29.757
	CNS0095613	Golden flower (tetraploid) 1	41.021
	CNS0095614	Golden flower (tetraploid) 2	43.493
	CNS0095615	Golden flower (tetraploid) 3	29.049
CRA001975	CRR073297	Stem 1	58.782
	CRR073298	Stem 2	57.864
	CRR073299	Stem 3	37.714
	CRR073300	Leaf 1	53.780
	CRR073301	Leaf 2	48.108
	CRR073302	Leaf 3	46.146
	CRR073303	Juvenile bud 1	43.058
	CRR073304	Juvenile bud 2	24.373
	CRR073305	Juvenile bud 3	22.690
	CRR073306	Third green 1	6.545
	CRR073307	Third green 2	5.840
	CRR073308	Third green 3	8.476
	CRR073309	Second white 1	3.720
	CRR073310	Second white 2	12.094
	CRR073311	Second white 3	11.286
	CRR073312	Silver flowering 1	4.482
	CRR073313	Silver flowering 2	6.507
	CRR073314	Silver flowering 3	7.817
	CRR073315	Gold flowering 1	28.397
	CRR073316	Gold flowering 2	37.947
	CRR073317	Gold flowering 3	20.604
	CRR073318	Tawny withering 1	54.062
	CRR073319	Tawny withering 2	57.751
	CRR073320	Tawny withering 3	51.819