Gene detail

Detail information of GWHGAAZE033100

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009589734.1	PREDICTED: probable ubiquitin conjugation factor E4 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9LF41\|UBE4_ARATH	Probable ubiquitin conjugation factor E4
trEMBL	tr\|M0ZM28\|M0ZM28_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400003648}
TAIR10	AT5G15400.1	U-box domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	777146	783237	+
GWHAAZE00000094	mRNA	777146	783237	+
GWHAAZE00000094	exon	777146	777999	+
GWHAAZE00000094	exon	778684	778885	+
GWHAAZE00000094	exon	779052	779203	+
GWHAAZE00000094	exon	779295	779592	+
GWHAAZE00000094	exon	779691	779843	+
GWHAAZE00000094	exon	780259	780462	+
GWHAAZE00000094	exon	780558	780670	+
GWHAAZE00000094	exon	780799	780913	+
GWHAAZE00000094	exon	781179	781268	+
GWHAAZE00000094	exon	781386	781589	+
GWHAAZE00000094	exon	781685	781780	+
GWHAAZE00000094	exon	781856	781978	+
GWHAAZE00000094	exon	782153	782245	+
GWHAAZE00000094	exon	782386	782550	+
GWHAAZE00000094	exon	782679	782822	+
GWHAAZE00000094	exon	782894	783237	+
GWHAAZE00000094	CDS	777146	777999	+
GWHAAZE00000094	CDS	778684	778885	+
GWHAAZE00000094	CDS	779052	779203	+
GWHAAZE00000094	CDS	779295	779592	+
GWHAAZE00000094	CDS	779691	779843	+
GWHAAZE00000094	CDS	780259	780462	+
GWHAAZE00000094	CDS	780558	780670	+
GWHAAZE00000094	CDS	780799	780913	+
GWHAAZE00000094	CDS	781179	781268	+
GWHAAZE00000094	CDS	781386	781589	+
GWHAAZE00000094	CDS	781685	781780	+
GWHAAZE00000094	CDS	781856	781978	+
GWHAAZE00000094	CDS	782153	782245	+
GWHAAZE00000094	CDS	782386	782550	+
GWHAAZE00000094	CDS	782679	782822	+
GWHAAZE00000094	CDS	782894	783073	+
GWHAAZE00000094	three_prime_UTR	783074	783237	+

Transcript Sequence
>GWHTAAZE033139 ATACTGTTAGCTATGGCTACAGTGAAAGTGAAGCCCCAAAGATCTCCAGCAGAAATCGAGGATATAATTCTGAGGAAAATATTTCTAGTTTCATTGATTGATTCGACGGAAAAGGATTCTCGGATCGTCTACTTGGAGATGACGGCAGCTGAAATACTCAGTGAAGATAGAGAATTAAGACTATCAAGGGATTTGATGGAGAGGGTTTTGATTGATCGTCTTTCGGGCGATTTCCAATCTGCCGAACCCCCTTTTCAGTATCTGTTAGGGTGTTATCGTCGCGCTTATGATGAGGGGAAGAAAATCACTTCGATGAAAGATAAGAATTTGAGGTCTGAGATGGAATTGGTTGTTAAACAATCGAAGAAGCTATCGGTTTCTTATTGTAGGATTCATTTGGGTAATCCTGGTATGTTTCCGAATTGGGATACTAATAGGTTAAGTGTATCTCCATTGTTGTCATTGATATTTTCCGAGGTTTCGAGCTCCATTGATGGATTTGGGGGTAGTAGTAGCAGTGGTGAGATTATGAGTCCGCCAGGGTTTCTTGATGAGTTTTTCAGGGAATCAGATTTCGAGTGTATGGACCCGATTTTGAAGCAGTTGTATGAGGATTTGAGGGGGAGTGTGCTTAAAGTTTCTGCTCTTGGAAACTTTCAGCAGCCATTGAGGGCATTGTTGTATTTGGTCAATATTCCGGTGGGAGCTAAGTCGTTGGTGAACCACCCATGGTGGATCCCCAATAGTGTTTATTTAAATGGGCGTGTGATTGAAATGACAAGCATTTTGGGGCCATTCTTCCATGTTAGTGCACTGCCTGATCAGATCATTTTCAAGAGTCAGCCTGATGTGGGCCAGCAGTGCTTCTCAGACGCATCAACCCGTCGCCCAGCAGATCTGCTATCATCCTTCACAACTATCAGAACTGTCATGAACCACTTGTATGATGGCCTGACAGAAGTTCTTAGGTCTCTTCTTAAGAAAGATACTCGCGAGAATGTTCTTGAGTATCTTGCTGAGGTGATCAACAAAAACTTGTCAAGGGCTCATTTACAGGTTGACCCATTATCTTGTGCAAGTTCTGGCATGTTTGTGAATCTCAGCACTGTTATGCTTCGGCTTTGTGATCCGTTCTTGGATGCAAATTTAACGAAAAGGGACAAAATTGATCCTAAATATGTATTCTACAGTACCCGTTTGGATCTTAGAGGATTGACTGCTCTACATGCATCATCGGAAGAAGTTACTGAATGGTTAAGGAAAAATATTCCCGACAAAGATGATGTGTCTAGAAATAATAGTGAGAATCGGTTGTTACAATCTCAGGAAGCTACCAGTTCTGGCAGTAATGCTGGTGGATTTTCCCAACTCCAAAGTAATAAGCCAATGTCAACATGTAGTGAAAAAGCTAACTACCCGTTTATCAGCGAATGCTTCTTTATGACTGCAAGGGTGCTCAACTTGGGCCTCTTGAAAGGATTTTCTGACTTTAAGCATCTTGTACAGGATATTTCGAGAAGCGAAGATACTTTATCCAGTTTCAGAGACATGCAAGCGCAAACACCTTCTCCACAATTAGAACAGGATATAGCTCGCCTTGAGAAAGAAATTGAATTATATTCACAGGAAAAATTATGTTATGAAGCTCAGTTACTGAGGGATGGAGGATTTCTCCAACGCGCACTCTCTTTCTACCGATTAATGGTGGTTTGGTTGGTTGACCTTGTCGGCGGTTTTAAAATGCCACTTCCATCAACTTGCCCAATGGAGTTTTCATGCATGCCTGAACACTTTGTGGAAGATGCTATGGAGTTGCTTATTTTTGCTTCTCGGATTCCTAAAGCTTTGGATGGGGTCTTGCTGGACGACTTCATGAACTTCATCATCATGTTCATGGCAAGTCCAGAGTATATCAGAAACCCATATTTAAGAGCAAAGATGGTTGAAGTCTTGAACTGCTGGATGCCTCGTGGAAGTGGCTCATCTGTTACGGCTACACTTTTTGAAGGGCACCAGCTGTCTCTAGAGTTTCTTGTGAAGAATCTTTTGAAGCTTTATGTTGACATCGAGTTCACAGGCTCCCATACTCAGTTCTATGACAAGTTTAGCATCCGTCATAACATTGCCGAACTCCTCGAATACCTGTGGCAGGTTCCTAGTCACCGCAATGCATGGACAAAGATTGCTAAAGACGAAGAAAAGGGTGTCTACTTGAATTTCTTGAACTTCCTTATCAATGATAGCATTTACCTTCTAGACGAAAGTCTTAACAAAATTCTTGAACACAAAGAGCTGGAAGCTGAGATGTCTAATACGGTGGAATGGGAACAAAGACCCGCACAAGAGAGGCAGGAGAGAACCCGACTTTTCCACTCCCAAGAGAATATAATTCGGATTGATATGAAGTTGGCAAATGAAGATGTGAGCATGCTGGCGTTTACGTCAGAGCAGATTACAGCTCCTTTTCTACTTGCAGAAATGGTTGAAAGAGTGGCCAGCATGCTGAATTACTTTCTGTTACAACTTGTTGGCCCCCAAAGAAAATCTCTGAGTTTGAAAGACCCAGAGAAGTACGAGTTCCGCCCAAAACAGTTGCTGAAGCAGATTGTCAAAATATATGTCAATCTGGCAAGGGGTGATAAAGAAAATATTTTCCCAGCTGCCATAACGAGGGATGGTCGATCTTACAATGAGCAGTTGTTCAGTGCTGCAGCAAATGTACTTCAGAGAATTGGTGAAGATGGGAGGGTCATACAAGAGTTCGTTGAGCTTGGTCACAAAGCCAAAGTTGCAGCTTCCGAGGCCATGGACGCTGAAGCTACTCTTGGAGAAATTCCAGATGAATTCCTCGACCCAATTCAAAAGTGGGAGATGCTGACAGACATTTTTCGTTGGCTGCAGTACACTTTAATGAAGGATCCAGTTATTTTACCTTCATCGAGGATTACAGTGGACCGACCCGTTATTCAGAGGCATCTTCTTAGTGATAGTGTACTTTTTCCATCAAGCGATCCGTTCAATCGTTCCCATCTTACATCAGACATGCTGATTCCCGACACGGAGCTCAAGGCACAAATCGAAGAATTCATAAGGTTAAGGAAACAAAAGCGGCCTGTGGAAGATTTGAGCTTGCAGAGTGCAAAGGCTTCGATGCAAACTGTAGCTGATGGAATGATAATTGATTAGTGAAATGGGGCTTTTTACTTTTTGAGTTTTTGCTAATATGTGTATATTGGATTCATTGTGTCGGATTTTTATATGATCATTAGGTGAATTGCCTTGCTGGGAGGAGTAACGTCATTTTTATCACATTATTTAACGTTATTGGAAGCCTGTAAGCTGTATAAGCT

Network for GWHGAAZE033100

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10408.10	Ufd2P_core	263	928	4.60E-206
PF04564.16	U-box	945	1033	6.30E-21

Protein Sequence

>GWHPAAZE033121
ILLAMATVKVKPQRSPAEIEDIILRKIFLVSLIDSTEKDSRIVYLEMTAAEILSEDRELRLSRDLMERVLIDRLSGDFQSAEPPFQYLLGCYRRAYDEGKKITSMKDKNLRSEMELVVKQSKKLSVSYCRIHLGNPGMFPNWDTNRLSVSPLLSLIFSEVSSSIDGFGGSSSSGEIMSPPGFLDEFFRESDFECMDPILKQLYEDLRGSVLKVSALGNFQQPLRALLYLVNIPVGAKSLVNHPWWIPNSVYLNGRVIEMTSILGPFFHVSALPDQIIFKSQPDVGQQCFSDASTRRPADLLSSFTTIRTVMNHLYDGLTEVLRSLLKKDTRENVLEYLAEVINKNLSRAHLQVDPLSCASSGMFVNLSTVMLRLCDPFLDANLTKRDKIDPKYVFYSTRLDLRGLTALHASSEEVTEWLRKNIPDKDDVSRNNSENRLLQSQEATSSGSNAGGFSQLQSNKPMSTCSEKANYPFISECFFMTARVLNLGLLKGFSDFKHLVQDISRSEDTLSSFRDMQAQTPSPQLEQDIARLEKEIELYSQEKLCYEAQLLRDGGFLQRALSFYRLMVVWLVDLVGGFKMPLPSTCPMEFSCMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWMPRGSGSSVTATLFEGHQLSLEFLVKNLLKLYVDIEFTGSHTQFYDKFSIRHNIAELLEYLWQVPSHRNAWTKIAKDEEKGVYLNFLNFLINDSIYLLDESLNKILEHKELEAEMSNTVEWEQRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLAEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVKIYVNLARGDKENIFPAAITRDGRSYNEQLFSAAANVLQRIGEDGRVIQEFVELGHKAKVAASEAMDAEATLGEIPDEFLDPIQKWEMLTDIFRWLQYTLMKDPVILPSSRITVDRPVIQRHLLSDSVLFPSSDPFNRSHLTSDMLIPDTELKAQIEEFIRLRKQKRPVEDLSLQSAKASMQTVADGMIID

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10597	UBE4B, UFD2	Protein processing in endoplasmic reticulum	map04141
K10597	UBE4B, UFD2	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name
GO:0016567	biological_process	protein ubiquitination
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0000151	cellular_component	ubiquitin ligase complex
GO:0004842	molecular_function	ubiquitin-protein transferase activity
GO:0034450	molecular_function	ubiquitin-ubiquitin ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.815
	SRR3591706	second leaf	18.248
	SRR3591707	mature leaf	28.199
	SRR3591708	Shoot apex	23.440
	SRR3591709	Stem	37.552
	SRR3591710	White floral bud	43.546
	SRR3591711	White flower	51.988
	SRR3591712	Green floral bud	39.938
	SRR3591713	Yellow flower	48.537
SRP173429	SRR8316895	Juvenile bud stage	21.833
	SRR8316896	Juvenile bud stage	35.422
	SRR8316897	Juvenile bud stage	15.015
	SRR8316894	Third green stage	15.706
	SRR8316900	Third green stage	40.133
	SRR8316901	Third green stage	37.158
	SRR8316898	Complete white stage	17.530
	SRR8316899	Complete white stage	52.853
	SRR8316903	Complete white stage	33.606
	SRR8316902	Silver flowering stage	20.510
	SRR8316904	Silver flowering stage	35.697
	SRR8316905	Silver flowering stage	15.311
	SRR8316906	Gold flowering stage	52.651
	SRR8316907	Gold flowering stage	47.361
	SRR8316908	Gold flowering stage	50.422
SRP132670	SRR6706286	Control	32.893
	SRR6706287	Light intensity 50%	35.862
	SRR6706288	Light intensity 20%	37.349
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.443
	CNS0095593	Slightly white alabastrum(diploid) 2	22.159
	CNS0095594	Slightly white alabastrum(diploid) 3	20.611
	CNS0095595	Whole white alabastrum(diploid) 2	21.464
	CNS0095596	Whole white alabastrum(diploid) 3	18.572
	CNS0095597	Whole white alabastrum(diploid) 4	21.153
	CNS0095598	Silvery flower (diploied) 1	28.722
	CNS0095599	Silvery flower (diploied) 2	22.767
	CNS0095600	Silvery flower (diploied) 3	53.054
	CNS0095601	Golden flower (diploid) 1	25.703
	CNS0095602	Golden flower (diploid) 2	47.438
	CNS0095603	Golden flower (diploid) 3	45.101
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.130
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.081
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.316
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.512
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.065
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.167
	CNS0095610	Silvery flower (tetraploid) 1	55.872
	CNS0095611	Silvery flower (tetraploid) 2	59.370
	CNS0095612	Silvery flower (tetraploid) 3	47.248
	CNS0095613	Golden flower (tetraploid) 1	28.098
	CNS0095614	Golden flower (tetraploid) 2	49.078
	CNS0095615	Golden flower (tetraploid) 3	53.373
CRA001975	CRR073297	Stem 1	29.015
	CRR073298	Stem 2	27.862
	CRR073299	Stem 3	26.235
	CRR073300	Leaf 1	34.593
	CRR073301	Leaf 2	31.186
	CRR073302	Leaf 3	24.788
	CRR073303	Juvenile bud 1	35.278
	CRR073304	Juvenile bud 2	28.570
	CRR073305	Juvenile bud 3	45.625
	CRR073306	Third green 1	15.364
	CRR073307	Third green 2	13.601
	CRR073308	Third green 3	18.283
	CRR073309	Second white 1	24.429
	CRR073310	Second white 2	23.633
	CRR073311	Second white 3	29.626
	CRR073312	Silver flowering 1	22.983
	CRR073313	Silver flowering 2	23.960
	CRR073314	Silver flowering 3	19.188
	CRR073315	Gold flowering 1	13.432
	CRR073316	Gold flowering 2	22.739
	CRR073317	Gold flowering 3	15.708
	CRR073318	Tawny withering 1	22.127
	CRR073319	Tawny withering 2	20.441
	CRR073320	Tawny withering 3	20.699