Gene detail

Detail information of GWHGAAZE033105

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFJ54352.1	0	WRKY transcription factor [Camellia sinensis]
Swissprot	tr\|Q9ZQ70\|WRKY3_ARATH	3E-145	Probable WRKY transcription factor 3
trEMBL	tr\|I2BK06\|I2BK06_CAMSI	0	WRKY transcription factor {ECO:0000313\|EMBL:AFJ54352.1}
TAIR10	AT2G03340.1	8E-116	WRKY DNA-binding protein 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	843430	847491	+
GWHAAZE00000094	mRNA	843430	847491	+
GWHAAZE00000094	exon	843430	843863	+
GWHAAZE00000094	exon	845705	846396	+
GWHAAZE00000094	exon	846492	846650	+
GWHAAZE00000094	exon	847212	847491	+
GWHAAZE00000094	five_prime_UTR	843430	843449	+
GWHAAZE00000094	CDS	843450	843863	+
GWHAAZE00000094	CDS	845705	846396	+
GWHAAZE00000094	CDS	846492	846650	+
GWHAAZE00000094	CDS	847212	847491	+

Transcript Sequence
>GWHTAAZE033144 GGGAGAATCAAGTGACATTAATGGCGGAGATGGACGGAGCTTCGAAAGTATCGGCACCACCAAGGCCAACGATCAATCTCCCGCCTCGACCATCCTTCGAAAACTTCTTCACCGGCGGTTTAAGTCCCGGCCCCATGACTCTAGTTTCCAACTTCTTCTCCTCCGACTACTACTACCCCGATTCTGATTGCCGTTCTTTCTCTCAGCTACTCGCCGGAGCTATGGCTTCTCCGATTGCCTCGGTAAAAGCGCCAAGCTTTGTACCGGATGATCCGGGTAATAATTTGGAGAAAGAGAAGAGTGAGAAGAATCTAGGGTTTAAGCAGAATAGGCCGATGAATTTGGTGGTTGCTCATTCTCCTATGTTTATGATTCCTCCTGGTCTTAGTCCTTCTGGTTTGCTTAACTCGCCTGGCTTCTTTTCTCCGGTTCAGAGCCCGTTTGGGATGTCCCACCAGCAGGCCCTGGCACACGTTACGGCCCAGGCTGCATTATCCCAATCTTATATGCATGCTCAAAACGATCAGCTTTCACTACCAGCTTCTGCAGGATCATTGACGCAACAAACTCCTTCCTTAACTCTTGGTTCAACTGCACCAGAACAGATGCATACTTTAATATTGGACCATGAAAGTCCCGTGAAGGAGGCTTCATCGGTCTCTCAGTCTGATAACAAACCTTTACCTCCTTCCGTTGCTGTTGATAAACCGGCAAATGATGGTTACAACTGGCGGAAATATGGGCAAAAGCAGGTGAAGACGAGTGAGTATCCTCGAAGCTACTATAAATGCACACATCTTAATTGTCCCGTCAAGAAGAAGATTGAGCGTTCACATGATGGTCAGGTAACTGAGGTTATTTACAAAGGTCAACACAACCATGAACTACCTCAGCCTAGTAAACATGCAAAAGATGGCAGTGATCTCAGTGGAACTATGAACTCCCATGGGAAGCCCCAACTCGGATTCCAGGGTAAGACTGAAATCAGCAGGTCAGTTGAAGCTGATCAAGTACCTACCGAGCTGACATCTGTACAGTTATATGAGTCAATGGATAGTGAGGAAATGGGTGATGCTGAATTAAGACCAGCTGAGGGGGATAATGATGAACCTAATCCGAAAAGAAGGAATACAGAGGGTGGGGCATCGGAGTTGGCTTCATCGCATAAAACAATCACGGAATCGAGAATAGTTGTGCAGACAAGAAGTGAAGTTGATCTTTTGGATGACGGGTACAAGTGGCGAAAATATGGGCAGAAAGTGGTCAAGGGCAATCCTTATCCAAGGAGTTATTACAAATGCACATACGCTGGATGCAATGTCCGTAAGCATGTGGAGAGGGCTTCAGCCGACCCTAAAGCTGTCGTAACTTCATATGAAGGCAAACATAATCATGATGTCCCACTAGGTAGGAACTGCGGCCACAACACATCTAACAGTAACTTGGGGCAGTTAAAGCCAAAAAAGGTAGTGGCTAGGAAGCCTACCCTACACGAAGACGTGGAATTTGGTAAAGATCAATTACAAGTTGTTTTACAGCTAAAAGAAGAGCATATCATAGCATAA

Network for GWHGAAZE033105

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	232	288	1.40E-24
PF03106.16	WRKY	402	459	9.40E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.354
	SRR3591706	second leaf	13.373
	SRR3591707	mature leaf	27.048
	SRR3591708	Shoot apex	23.540
	SRR3591709	Stem	37.301
	SRR3591710	White floral bud	39.878
	SRR3591711	White flower	89.892
	SRR3591712	Green floral bud	18.638
	SRR3591713	Yellow flower	176.962
SRP173429	SRR8316895	Juvenile bud stage	13.870
	SRR8316896	Juvenile bud stage	19.320
	SRR8316897	Juvenile bud stage	10.162
	SRR8316894	Third green stage	7.510
	SRR8316900	Third green stage	14.099
	SRR8316901	Third green stage	18.324
	SRR8316898	Complete white stage	15.849
	SRR8316899	Complete white stage	28.787
	SRR8316903	Complete white stage	33.434
	SRR8316902	Silver flowering stage	27.545
	SRR8316904	Silver flowering stage	41.404
	SRR8316905	Silver flowering stage	22.028
	SRR8316906	Gold flowering stage	95.342
	SRR8316907	Gold flowering stage	94.956
	SRR8316908	Gold flowering stage	80.186
SRP132670	SRR6706286	Control	30.585
	SRR6706287	Light intensity 50%	25.988
	SRR6706288	Light intensity 20%	23.792
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.794
	CNS0095593	Slightly white alabastrum(diploid) 2	14.660
	CNS0095594	Slightly white alabastrum(diploid) 3	14.199
	CNS0095595	Whole white alabastrum(diploid) 2	12.126
	CNS0095596	Whole white alabastrum(diploid) 3	6.348
	CNS0095597	Whole white alabastrum(diploid) 4	11.651
	CNS0095598	Silvery flower (diploied) 1	74.185
	CNS0095599	Silvery flower (diploied) 2	44.795
	CNS0095600	Silvery flower (diploied) 3	124.050
	CNS0095601	Golden flower (diploid) 1	78.605
	CNS0095602	Golden flower (diploid) 2	182.049
	CNS0095603	Golden flower (diploid) 3	173.402
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.714
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.616
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.328
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.886
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.159
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.141
	CNS0095610	Silvery flower (tetraploid) 1	106.611
	CNS0095611	Silvery flower (tetraploid) 2	107.336
	CNS0095612	Silvery flower (tetraploid) 3	27.097
	CNS0095613	Golden flower (tetraploid) 1	95.728
	CNS0095614	Golden flower (tetraploid) 2	86.475
	CNS0095615	Golden flower (tetraploid) 3	281.569
CRA001975	CRR073297	Stem 1	38.293
	CRR073298	Stem 2	33.525
	CRR073299	Stem 3	35.673
	CRR073300	Leaf 1	21.502
	CRR073301	Leaf 2	26.765
	CRR073302	Leaf 3	22.083
	CRR073303	Juvenile bud 1	18.559
	CRR073304	Juvenile bud 2	16.389
	CRR073305	Juvenile bud 3	38.804
	CRR073306	Third green 1	16.108
	CRR073307	Third green 2	12.489
	CRR073308	Third green 3	17.297
	CRR073309	Second white 1	7.594
	CRR073310	Second white 2	11.901
	CRR073311	Second white 3	12.279
	CRR073312	Silver flowering 1	23.660
	CRR073313	Silver flowering 2	22.181
	CRR073314	Silver flowering 3	28.597
	CRR073315	Gold flowering 1	94.008
	CRR073316	Gold flowering 2	126.344
	CRR073317	Gold flowering 3	63.910
	CRR073318	Tawny withering 1	35.588
	CRR073319	Tawny withering 2	19.926
	CRR073320	Tawny withering 3	31.646