Gene detail

Detail information of GWHGAAZE033114

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02253.1	5.4406E-164	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SPG2\|MYB28_ARATH	4E-67	Transcription factor MYB28
trEMBL	tr\|A0A068U3S8\|A0A068U3S8_COFCA	2E-164	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02253.1}
TAIR10	AT5G15310.1	6E-99	myb domain protein 16

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	976086	977731	-
GWHAAZE00000094	mRNA	976086	977731	-
GWHAAZE00000094	exon	976086	976872	-
GWHAAZE00000094	exon	977165	977294	-
GWHAAZE00000094	exon	977599	977731	-
GWHAAZE00000094	CDS	977599	977731	-
GWHAAZE00000094	CDS	977165	977294	-
GWHAAZE00000094	CDS	976086	976872	-

Transcript Sequence
>GWHTAAZE033153 ATGGGTCGATCACCATGCTGCGATAAACTAGGTTTGAAGAAAGGGCCATGGACCCCCGAAGAAGATCAAAAGCTCTTAGCTTACATCCAACAACACGGCCATGGAAGCTGGCGTGCATTACCTACTAAAGCTGGTCTTCAGAGATGCGGGAAGAGTTGCAGACTGAGGTGGACTAATTATCTTCGGCCGGATATTAAGAGAGGGAAGTTCAGTTCGCAGGAAGAACAAACCATTATTCAACTTCATGCTCTGTTAGGGAACAGGTGGTCGGCTATAGCAACTCACTTACCTAAAAGAACCGATAACGAGATCAAGAATTATTGGAACACTCATCTTAAGAAAAGGCTAGCCAAAATGGGAATTGACCCTCTCACCCATAAGCCCAAAAATGATGCACTTTTGTCCTCTCGCGACTCGGGTCCGTCCAAGAATTCAGCTAACCTTAGCCACATGGCTCAGTGGGAAAGTGCCCGGCTTGAAGCCGAAGCCAGGTTGGTTCGCCAATCAAAGCTACGCGGTTCAAATGTACTCAACCATCAGCCAGAGTTTAGCAAGACGGTCCCGCCTCTAGCTAGCCCACCCCTTTGTCTTGACATACTAAAAGCTTGGAATAATGCTGCCTGGCCTAAGCCATCAGTCGAAGTCAATGCGGTTAGAGGGGATTTGGAGTCACCGACGTCTACGCTTAGTTACTCAGAAAATGTACCGCTGCAGATCTCCAATGCCGGAATTGGGGAGAGCTCCGGGACATTTATCAAGTTTGTGGGCAATTCCGAGGATGGGATGAAAGAAGATGGAGAAGAAGATTGGAACTGCCCGCAAACTCACCTTCCTGGTAGTGATTTTGTGGAGAAGTTCACTGATCTTTTGCTTAATAAATCCGGTGGTGATGATGACCAGAGCTTCTCTGAAGGTGGGGAAGAGTCCGATACTGGTGATGGTAGCGCACCCAGTGGTACTGGAAGTGAATATTACGAAGACGACAAGAACTACTGGAATAGCATTCTTAACTTGGTGAATTCTTCGCCTTCCCATTCTCCTATGTTCTAA

Network for GWHGAAZE033114

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	2.30E-15
PF00249.32	Myb_DNA-binding	67	112	4.70E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.414
	SRR3591706	second leaf	15.741
	SRR3591707	mature leaf	8.816
	SRR3591708	Shoot apex	31.116
	SRR3591709	Stem	1.343
	SRR3591710	White floral bud	5.883
	SRR3591711	White flower	6.079
	SRR3591712	Green floral bud	18.682
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	14.839
	SRR8316896	Juvenile bud stage	17.770
	SRR8316897	Juvenile bud stage	6.845
	SRR8316894	Third green stage	9.253
	SRR8316900	Third green stage	23.468
	SRR8316901	Third green stage	30.363
	SRR8316898	Complete white stage	0.419
	SRR8316899	Complete white stage	21.071
	SRR8316903	Complete white stage	2.468
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.071
SRP132670	SRR6706286	Control	27.110
	SRR6706287	Light intensity 50%	24.480
	SRR6706288	Light intensity 20%	26.740
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.178
	CNS0095593	Slightly white alabastrum(diploid) 2	8.058
	CNS0095594	Slightly white alabastrum(diploid) 3	6.871
	CNS0095595	Whole white alabastrum(diploid) 2	5.737
	CNS0095596	Whole white alabastrum(diploid) 3	4.062
	CNS0095597	Whole white alabastrum(diploid) 4	5.179
	CNS0095598	Silvery flower (diploied) 1	16.106
	CNS0095599	Silvery flower (diploied) 2	7.586
	CNS0095600	Silvery flower (diploied) 3	3.270
	CNS0095601	Golden flower (diploid) 1	18.455
	CNS0095602	Golden flower (diploid) 2	8.163
	CNS0095603	Golden flower (diploid) 3	7.395
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.012
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.791
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.356
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.188
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.064
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.074
	CNS0095610	Silvery flower (tetraploid) 1	0.088
	CNS0095611	Silvery flower (tetraploid) 2	2.891
	CNS0095612	Silvery flower (tetraploid) 3	1.506
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.356
	CNS0095615	Golden flower (tetraploid) 3	0.029
CRA001975	CRR073297	Stem 1	21.447
	CRR073298	Stem 2	24.651
	CRR073299	Stem 3	21.059
	CRR073300	Leaf 1	19.184
	CRR073301	Leaf 2	19.585
	CRR073302	Leaf 3	20.852
	CRR073303	Juvenile bud 1	9.669
	CRR073304	Juvenile bud 2	9.587
	CRR073305	Juvenile bud 3	10.395
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.815
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.021
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	5.744
	CRR073316	Gold flowering 2	5.202
	CRR073317	Gold flowering 3	5.974
	CRR073318	Tawny withering 1	2.624
	CRR073319	Tawny withering 2	2.741
	CRR073320	Tawny withering 3	1.166