Gene detail

Detail information of GWHGAAZE033124

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283706.1	0	PREDICTED: cyclic dof factor 2 [Vitis vinifera]
Swissprot	tr\|Q93ZL5\|CDF2_ARATH	2E-110	Cyclic dof factor 2
trEMBL	tr\|F6H5U5\|F6H5U5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47566.1}
TAIR10	AT3G47500.1	1E-71	cycling DOF factor 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	1128495	1129805	+
GWHAAZE00000094	mRNA	1128495	1129805	+
GWHAAZE00000094	exon	1128495	1129805	+
GWHAAZE00000094	CDS	1128495	1129805	+

Transcript Sequence
>GWHTAAZE033163 ATGAAAATTCAGGATCCATTGGAAGAGAAAGTTACTGATACTAAAGTAAACAAAGGAACCCAAAATTTGAGCTCAGAGGACACTACGGATCCCAACGTGACTTCAATGATAGATGATAATCCAAAGACACCATCAGTGGACAATGAAGCTGCAACAATAAAAGCTTCCAAGACGGAAGAAGAACAAAGTGAGTCTAGTAACTCGCAAGATAAGACCCTTAAGAAGCCCGACAAGATACTCCCATGTCCTCGCTGTAACAGCATGGACACCAAGTTCTGTTACTTCAATAACTATAATGTCAACCAACCCCGCCACTTTTGCAAGAACTGCCAGAGATACTGGACTGCCGGTGGGACCATGAGGAATGTTCCGGTGGGTGCTGGTCGCCGTAAGAACAAGAGTTCAGCCTCTCAATACCGTCAAATATCGGTCTCAGAAGCTCTTCAGAGTGCCCGTGTAGATCTCCCTAACGGGATCCACCACCCCAATATGAATACCAACGGCACGGTCCTCACGTTTGGCTCCGACTCGCCCATTTGCGAGTCGATGGCTTCGGTCTTGAAAATTGCTGAGAAAACAATGCAGAAATGCTCACAAAATGGGTTCCATAAACCAGAAGAATCAAGACGACCGGTTTCTAACGGATATGGTGATAATGGGGAAGATCACTCGAGTGGATCTTCTGTCGCTGCTGCAAATTCAAAGGATGATTCTGGTAGAATTGTGTTGCAAGAACCGGAACTACAGAATTTTCCAAACTTTCCTCCTCAAATACCGTGTTTTCCTCCTTGGCCTTATCAGTGGAATCCAGCTCAATGGAACTCTCAAGCACCAATGCCGGCTTTCTGCCCACCACCCGGATTTCCTATGCCATTTTACCCACCGTCACCTTATTGGGTACCAGGTTCTTGGAATGTGCGTTGGATCGCACCACCACCTTCGTCTCCAAATGGCGCAGCCCCTTCTTTGGGTCCCAATTCCCCAACCTTGGGGAAGCATTCAAGGGATGAAAACTCGGATAAGTCAAGTAAAGGGGAAGAGGAGCCACAAAAGGAGAATAACCCCGAGAAGTGCCTTTGGTTTCCGAAGACACTGAGAATCGATGACCCGGGTGAAGCTGCAAAGAGCTCTATATGGGCGACACTAGGGATTAACAACGAGAATGATGATCCTGTTAGCAGAGGAGGAAGTCTATTTAAGGCCTTTCGATCAAAGGGAGATGAAAAGAATCATATTTCAGGGGGCTGTCCTGTATTACAAGCTAATCCGGCCGCATTGTCTCGGTCCCTCAACTTCCATGAAAGCTCGTGA

Network for GWHGAAZE033124

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02701.16	zf-Dof	77	134	3.60E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.475
	SRR3591706	second leaf	30.154
	SRR3591707	mature leaf	39.335
	SRR3591708	Shoot apex	21.260
	SRR3591709	Stem	24.234
	SRR3591710	White floral bud	23.376
	SRR3591711	White flower	40.901
	SRR3591712	Green floral bud	13.324
	SRR3591713	Yellow flower	38.684
SRP173429	SRR8316895	Juvenile bud stage	8.679
	SRR8316896	Juvenile bud stage	11.093
	SRR8316897	Juvenile bud stage	3.792
	SRR8316894	Third green stage	5.127
	SRR8316900	Third green stage	11.671
	SRR8316901	Third green stage	12.350
	SRR8316898	Complete white stage	10.831
	SRR8316899	Complete white stage	21.588
	SRR8316903	Complete white stage	22.351
	SRR8316902	Silver flowering stage	24.390
	SRR8316904	Silver flowering stage	31.809
	SRR8316905	Silver flowering stage	16.517
	SRR8316906	Gold flowering stage	73.071
	SRR8316907	Gold flowering stage	68.757
	SRR8316908	Gold flowering stage	63.411
SRP132670	SRR6706286	Control	21.789
	SRR6706287	Light intensity 50%	24.956
	SRR6706288	Light intensity 20%	22.394
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.698
	CNS0095593	Slightly white alabastrum(diploid) 2	6.194
	CNS0095594	Slightly white alabastrum(diploid) 3	4.736
	CNS0095595	Whole white alabastrum(diploid) 2	6.069
	CNS0095596	Whole white alabastrum(diploid) 3	5.708
	CNS0095597	Whole white alabastrum(diploid) 4	5.830
	CNS0095598	Silvery flower (diploied) 1	16.782
	CNS0095599	Silvery flower (diploied) 2	11.194
	CNS0095600	Silvery flower (diploied) 3	32.204
	CNS0095601	Golden flower (diploid) 1	15.575
	CNS0095602	Golden flower (diploid) 2	34.721
	CNS0095603	Golden flower (diploid) 3	32.997
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.367
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.297
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.377
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.333
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.453
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.500
	CNS0095610	Silvery flower (tetraploid) 1	24.076
	CNS0095611	Silvery flower (tetraploid) 2	24.120
	CNS0095612	Silvery flower (tetraploid) 3	12.903
	CNS0095613	Golden flower (tetraploid) 1	15.918
	CNS0095614	Golden flower (tetraploid) 2	19.724
	CNS0095615	Golden flower (tetraploid) 3	90.442
CRA001975	CRR073297	Stem 1	13.990
	CRR073298	Stem 2	12.838
	CRR073299	Stem 3	16.681
	CRR073300	Leaf 1	15.180
	CRR073301	Leaf 2	19.279
	CRR073302	Leaf 3	17.495
	CRR073303	Juvenile bud 1	27.695
	CRR073304	Juvenile bud 2	27.416
	CRR073305	Juvenile bud 3	31.738
	CRR073306	Third green 1	164.530
	CRR073307	Third green 2	134.120
	CRR073308	Third green 3	147.768
	CRR073309	Second white 1	93.022
	CRR073310	Second white 2	101.918
	CRR073311	Second white 3	110.710
	CRR073312	Silver flowering 1	111.091
	CRR073313	Silver flowering 2	96.487
	CRR073314	Silver flowering 3	77.212
	CRR073315	Gold flowering 1	12.580
	CRR073316	Gold flowering 2	12.021
	CRR073317	Gold flowering 3	10.224
	CRR073318	Tawny withering 1	13.288
	CRR073319	Tawny withering 2	6.711
	CRR073320	Tawny withering 3	9.369