Gene detail

Detail information of GWHGAAZE033125

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004237711.1	4.99698E-25	PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum lycopersicum]
Swissprot	tr\|Q9SAB5\|FBLK2_ARATH	5E-10	Putative F-box/LRR-repeat/kelch-repeat protein At1g11620
trEMBL	tr\|A0A067FV62\|A0A067FV62_CITSI	9E-25	Uncharacterized protein {ECO:0000313\|EMBL:KDO71193.1}
TAIR10	AT1G11620.1	0.00000003	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	1143857	1145626	-
GWHAAZE00000094	mRNA	1143857	1145626	-
GWHAAZE00000094	exon	1143857	1143915	-
GWHAAZE00000094	exon	1144054	1144229	-
GWHAAZE00000094	exon	1144624	1144702	-
GWHAAZE00000094	exon	1144787	1144929	-
GWHAAZE00000094	exon	1145070	1145626	-
GWHAAZE00000094	CDS	1145070	1145626	-
GWHAAZE00000094	CDS	1144787	1144929	-
GWHAAZE00000094	CDS	1144624	1144702	-
GWHAAZE00000094	CDS	1144054	1144229	-
GWHAAZE00000094	CDS	1143857	1143915	-

Transcript Sequence
>GWHTAAZE033164 ATGGTGAGTTGCGGTGATCATGATCTCCCTGAAGATTTGTTGATTCAAATTTTGTCGAGGCTGCCCATGAAATCCCTAGTATGTTGCAAGTGTGTATGCCCATACTGGAATGCTCTCATTGAAAGCCCTATGTTTATTACTACGCACTTCAACCACCCCAAGAATCATACATGTCTCCTTGTTCATTATTGCAAGGAGCGCCGCCGATCCTGCTGCTATGAGTCTACTTTTGACTTGTACACTGATGATGAAACCATTGTCAACAATGAAAGCGAGCTCCCTGTGCATGAAGATATTGATAATCCACTAATCAAGACAACATATCCACTACCCAAGAAACCTTTTAGTCATTTTCGTGATATATTTGGTCCTGTTAATGGCCTATTTCTCGTGCATTATGCTAGTAATCAAGATACTTATCATGTGGCTTTGTGGAACCTTGCTACAAAAGAATTCAGGACCCTCCCTGCACCAGCTTTCAATCTTCCACCGAATAATCACGCCTACAATGGACTCAATTTTGGATTTGGTTTGGACCCTTCTCCAATGACTACAAGAATTACCACCAGAGGGCGCAACTGTACATATCTGGATGGAGCTTATTACTGGATGTCAAGGGACCAAGGCAACAATAGCCTTACGAGGATAGTTATGTTTGATATGGCCAAAGAGATTTTTCGAGATATAGAACCACCACCATGTAGGTTTCTGGACAATGTAGATATATGGAAAGGTGTGATTTTGGAGTCAATTGAAGTTTGGATAATGGAGGGAGAAGGATCCAGGAAGTTGCAGGAAGTTAACCACGCAACTGGCTTTCTCCGCCCCTTCCCCTATTCCAGTATCCTATCCCTTATTGACCCCGTCCCCGTCCCCGTCCCTGCTCGACTCAGTTCATTGAATATTTTAGCACTAAAACTTGGGAAGTTTGCAAACATTGTGTTGTATTGTATAGGTATTGAGTGCAAATCTCATCTTCTGAATTTTGGATGTGAAGGAGCCAATAATGACTAA

Network for GWHGAAZE033125

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	8	45	7.70E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.237
	SRR3591709	Stem	0.165
	SRR3591710	White floral bud	0.127
	SRR3591711	White flower	0.355
	SRR3591712	Green floral bud	0.202
	SRR3591713	Yellow flower	0.049
SRP173429	SRR8316895	Juvenile bud stage	0.073
	SRR8316896	Juvenile bud stage	0.002
	SRR8316897	Juvenile bud stage	0.083
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.145
	SRR8316901	Third green stage	0.134
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.022
	SRR8316903	Complete white stage	0.123
	SRR8316902	Silver flowering stage	0.074
	SRR8316904	Silver flowering stage	0.030
	SRR8316905	Silver flowering stage	0.046
	SRR8316906	Gold flowering stage	0.135
	SRR8316907	Gold flowering stage	0.109
	SRR8316908	Gold flowering stage	0.204
SRP132670	SRR6706286	Control	0.057
	SRR6706287	Light intensity 50%	0.095
	SRR6706288	Light intensity 20%	0.112
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.170
	CNS0095595	Whole white alabastrum(diploid) 2	0.043
	CNS0095596	Whole white alabastrum(diploid) 3	0.239
	CNS0095597	Whole white alabastrum(diploid) 4	0.053
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.055
	CNS0095600	Silvery flower (diploied) 3	0.222
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.015
	CNS0095603	Golden flower (diploid) 3	0.104
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.010
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.024
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.125
	CRR073298	Stem 2	0.150
	CRR073299	Stem 3	0.083
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.286
	CRR073302	Leaf 3	0.085
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.072
	CRR073305	Juvenile bud 3	0.360
	CRR073306	Third green 1	0.082
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.067
	CRR073309	Second white 1	0.322
	CRR073310	Second white 2	0.032
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.101
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.353
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.129
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000