Detail information of GWHGAAZE033126


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004237713.11.52658E-38PREDICTED: F-box only protein 8-like isoform X1 [Solanum lycopersicum]
Swissprottr|Q9SU30|CPR30_ARATH5E-12F-box protein CPR30
trEMBLtr|A0A067FV09|A0A067FV09_CITSI2E-38Uncharacterized protein {ECO:0000313|EMBL:KDO71194.1}
TAIR10AT4G12560.21E-11F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene12334991234904-
GWHAAZE00000094mRNA12334991234904-
GWHAAZE00000094exon12334991234286-
GWHAAZE00000094exon12343911234904-
GWHAAZE00000094CDS12343911234904-
GWHAAZE00000094CDS12334991234286-
Transcript Sequence

Network for GWHGAAZE033126

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box8478.60E-07
PF07734.14FBA_12143445.50E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 2.068
SRR8316896Juvenile bud stage 2.042
SRR8316897Juvenile bud stage 0.739
SRR8316894Third green stage 0.794
SRR8316900Third green stage 4.100
SRR8316901Third green stage 2.161
SRR8316898Complete white stage 0.480
SRR8316899Complete white stage 3.788
SRR8316903Complete white stage 0.985
SRR8316902Silver flowering stage0.218
SRR8316904Silver flowering stage1.101
SRR8316905Silver flowering stage0.168
SRR8316906Gold flowering stage 0.371
SRR8316907Gold flowering stage 0.280
SRR8316908Gold flowering stage 0.174
SRP132670SRR6706286Control3.109
SRR6706287Light intensity 50%2.339
SRR6706288Light intensity 20%2.890
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.200
CNS0095593Slightly white alabastrum(diploid) 22.767
CNS0095594Slightly white alabastrum(diploid) 31.697
CNS0095595Whole white alabastrum(diploid) 21.583
CNS0095596Whole white alabastrum(diploid) 31.851
CNS0095597Whole white alabastrum(diploid) 42.294
CNS0095598Silvery flower (diploied) 13.940
CNS0095599Silvery flower (diploied) 22.029
CNS0095600Silvery flower (diploied) 32.217
CNS0095601Golden flower (diploid) 12.041
CNS0095602Golden flower (diploid) 22.032
CNS0095603Golden flower (diploid) 32.109
CNS0095604Slightly white alabastrum(tetraploid) 11.083
CNS0095605Slightly white alabastrum(tetraploid) 20.195
CNS0095606Slightly white alabastrum(tetraploid) 31.484
CNS0095607Whole white alabastrum(tetraploid) 10.929
CNS0095608Whole white alabastrum(tetraploid) 20.843
CNS0095609Whole white alabastrum(tetraploid) 31.647
CNS0095610Silvery flower (tetraploid) 10.284
CNS0095611Silvery flower (tetraploid) 20.267
CNS0095612Silvery flower (tetraploid) 30.422
CNS0095613Golden flower (tetraploid) 10.349
CNS0095614Golden flower (tetraploid) 20.057
CNS0095615Golden flower (tetraploid) 30.027
CRA001975CRR073297Stem 13.793
CRR073298Stem 24.183
CRR073299Stem 32.521
CRR073300Leaf 13.875
CRR073301Leaf 23.868
CRR073302Leaf 32.600
CRR073303Juvenile bud 11.931
CRR073304Juvenile bud 22.229
CRR073305Juvenile bud 34.029
CRR073306Third green 10.000
CRR073307Third green 20.128
CRR073308Third green 30.033
CRR073309Second white 10.061
CRR073310Second white 20.123
CRR073311Second white 30.097
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.584
CRR073316Gold flowering 21.302
CRR073317Gold flowering 31.096
CRR073318Tawny withering 11.579
CRR073319Tawny withering 21.849
CRR073320Tawny withering 32.212