Gene detail

Detail information of GWHGAAZE033128

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009631792.1	1.55447E-50	PREDICTED: putative F-box protein At3g16210 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	4E-21	F-box protein CPR30
trEMBL	tr\|M0ZS94\|M0ZS94_SOLTU	2E-53	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400006971}
TAIR10	AT4G12560.2	7E-20	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	1271430	1273040	-
GWHAAZE00000094	mRNA	1271430	1273040	-
GWHAAZE00000094	exon	1271430	1271488	-
GWHAAZE00000094	exon	1271645	1273040	-
GWHAAZE00000094	CDS	1271645	1273040	-
GWHAAZE00000094	CDS	1271430	1271488	-

Transcript Sequence
>GWHTAAZE033167 ATGGTGAGCTGCAGTGATCATGATCTCCCTGAAGATTTGTTGATTCAAATTCTGTCGAGGCTGCCTGTGAAATCCCTAGTATGTTGCAAGTGCGTATGCCCGTACTGGAACGCTCTCATTGAAAGCCCTATGTTTATTACTACGCACTTCAACCACCCCAAGAATCATACACGTCTCCTTGTTCATTATTACAGGGAGCGCCGATACCGCCGCTTTGATTCCGCTTTTGACTTGTACCCCAATGATGAAACTGTTATCAACAATGGAAGCGAGCTCCCTGTGCATGAAGATATTGATAATCCACTAGTCAAGACAACATATCCACTACCCAAGTTACTTTTTAGTTCTTTTAGTGATATATTTGGTCCTGTTAATGGCCTATTTCTGGTGCATTATGTTAGTAATCCAGAAGCTGATAATGTGGCTTTGTGGAACCCTGCTACAAAAGAATTCAGGACCCTCCCTGCACCGGCCTTCAATCTTCCACCGACTAATTACACCTACAATGGACTCAATTTTGGATTTGGTTTGGACCCCTTCACCAATGACTACAAGGTGGTTTTGATCCTGTTTTATGTGGAAGAAAAAAATCGTATGGCAATTGTTATAGTGTATTCCCTGGCAACTAACTCTTGGAGACTAGTCGACGATGTGTTGCCATCAGTTAGTGGCATTTTCAATACTTATAATGACAAGATTACCACCAGAGGGCGCAACTGTACGTATCTGAACGGAGCTTATTACTGGATGTCAAGGGACCAAGGCGACGATAGCCTTACGAGGATAGTTATGTTTGATATGGCCAAGGAGGTTTTTCGAGATATAGAACCACCACCATGTAATACCAAAAGATCTCCTTCGGTATTCTTTGAGCTTATGTTGTGGAATGACAATGTTGCTCTCTTACTTTCCAAATATACAGGTACGTTTCTGGACAATGTAGAGATATGGAAAGGTATGATTTTGGAATCAATTGAAGTATGGATAATGGAGGGAGAAGGGCATCATTGGACCAACCATTTGATTTATGGTCCCCATATACACGTCCTCCGTCCCCTTGGGTTTTCTAGGAACGGCGATATTTTCATGGGAACTTGTTCTTTTAACCTGTTTTTGTACAACCCTAATAAGCATGAAGTAAGAGATTTTGGAACCAAGGGAAGGAAACTTAAAGTTTTCAATTACAAGGAGACTGTAGCTCCAATTATGCCCAGATCCAGGAAGTTGAAGGAGGTTAACCCCACAACTGGCTTTATCCCCTTCCACCCATTTCCCAATATCCTATCCCTTATTGCCTCCGCCCCCGGCCCCGCCCCCACCCCCGCCCGACTCAGTTCATTGAATATTTTAGCACTAAAACTTGGGAAGTTTGCAAACATTGTGTTGTATTGTATAGTTATTGAGTGCAAATCTCATCATCTGAATTTTGCAAGTGAAGGAGCCAAGAATGACTAA

Network for GWHGAAZE033128

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	8	45	1.50E-08
PF07734.14	FBA_1	242	317	1.70E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.534
	SRR3591706	second leaf	2.636
	SRR3591707	mature leaf	4.683
	SRR3591708	Shoot apex	9.049
	SRR3591709	Stem	5.593
	SRR3591710	White floral bud	5.157
	SRR3591711	White flower	4.918
	SRR3591712	Green floral bud	6.642
	SRR3591713	Yellow flower	3.202
SRP173429	SRR8316895	Juvenile bud stage	5.982
	SRR8316896	Juvenile bud stage	8.127
	SRR8316897	Juvenile bud stage	1.779
	SRR8316894	Third green stage	2.697
	SRR8316900	Third green stage	7.850
	SRR8316901	Third green stage	7.598
	SRR8316898	Complete white stage	1.575
	SRR8316899	Complete white stage	7.327
	SRR8316903	Complete white stage	3.301
	SRR8316902	Silver flowering stage	2.332
	SRR8316904	Silver flowering stage	2.596
	SRR8316905	Silver flowering stage	0.907
	SRR8316906	Gold flowering stage	4.841
	SRR8316907	Gold flowering stage	4.733
	SRR8316908	Gold flowering stage	2.584
SRP132670	SRR6706286	Control	6.833
	SRR6706287	Light intensity 50%	6.234
	SRR6706288	Light intensity 20%	6.398
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.273
	CNS0095593	Slightly white alabastrum(diploid) 2	3.677
	CNS0095594	Slightly white alabastrum(diploid) 3	4.733
	CNS0095595	Whole white alabastrum(diploid) 2	3.725
	CNS0095596	Whole white alabastrum(diploid) 3	4.420
	CNS0095597	Whole white alabastrum(diploid) 4	2.665
	CNS0095598	Silvery flower (diploied) 1	5.093
	CNS0095599	Silvery flower (diploied) 2	3.150
	CNS0095600	Silvery flower (diploied) 3	6.066
	CNS0095601	Golden flower (diploid) 1	4.949
	CNS0095602	Golden flower (diploid) 2	6.671
	CNS0095603	Golden flower (diploid) 3	6.745
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.550
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.379
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.702
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.909
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.215
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.020
	CNS0095610	Silvery flower (tetraploid) 1	5.494
	CNS0095611	Silvery flower (tetraploid) 2	8.888
	CNS0095612	Silvery flower (tetraploid) 3	5.488
	CNS0095613	Golden flower (tetraploid) 1	2.712
	CNS0095614	Golden flower (tetraploid) 2	5.652
	CNS0095615	Golden flower (tetraploid) 3	5.028
CRA001975	CRR073297	Stem 1	5.918
	CRR073298	Stem 2	4.711
	CRR073299	Stem 3	4.000
	CRR073300	Leaf 1	5.372
	CRR073301	Leaf 2	3.366
	CRR073302	Leaf 3	3.793
	CRR073303	Juvenile bud 1	4.293
	CRR073304	Juvenile bud 2	2.757
	CRR073305	Juvenile bud 3	5.362
	CRR073306	Third green 1	0.585
	CRR073307	Third green 2	0.968
	CRR073308	Third green 3	0.845
	CRR073309	Second white 1	1.226
	CRR073310	Second white 2	0.779
	CRR073311	Second white 3	1.520
	CRR073312	Silver flowering 1	1.870
	CRR073313	Silver flowering 2	2.354
	CRR073314	Silver flowering 3	2.112
	CRR073315	Gold flowering 1	1.741
	CRR073316	Gold flowering 2	2.916
	CRR073317	Gold flowering 3	2.026
	CRR073318	Tawny withering 1	4.786
	CRR073319	Tawny withering 2	3.699
	CRR073320	Tawny withering 3	4.047