Detail information of GWHGAAZE033132


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009767704.11.33776E-40PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nicotiana sylvestris]
Swissprottr|Q8LPN7|RNG1L_ARATH5E-27E3 ubiquitin-protein ligase RING1-like
trEMBLtr|A9PB64|A9PB64_POPTR8E-36Zinc finger family protein {ECO:0000313|EMBL:EEF02304.1}
TAIR10AT1G55530.13E-24RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene14321651432773-
GWHAAZE00000094mRNA14321651432773-
GWHAAZE00000094exon14321651432773-
GWHAAZE00000094CDS14321651432773-
Transcript Sequence

Network for GWHGAAZE033132

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_2931353.40E-14
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.167
SRR3591706second leaf0.957
SRR3591707mature leaf5.992
SRR3591708Shoot apex7.023
SRR3591709Stem6.797
SRR3591710White floral bud9.452
SRR3591711White flower29.158
SRR3591712Green floral bud3.930
SRR3591713Yellow flower35.587
SRP173429 SRR8316895Juvenile bud stage 37.362
SRR8316896Juvenile bud stage 104.341
SRR8316897Juvenile bud stage 27.758
SRR8316894Third green stage 3.439
SRR8316900Third green stage 18.651
SRR8316901Third green stage 45.189
SRR8316898Complete white stage 13.372
SRR8316899Complete white stage 12.429
SRR8316903Complete white stage 20.190
SRR8316902Silver flowering stage49.147
SRR8316904Silver flowering stage41.655
SRR8316905Silver flowering stage47.814
SRR8316906Gold flowering stage 151.772
SRR8316907Gold flowering stage 162.923
SRR8316908Gold flowering stage 93.022
SRP132670SRR6706286Control12.453
SRR6706287Light intensity 50%10.831
SRR6706288Light intensity 20%9.439
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.322
CNS0095593Slightly white alabastrum(diploid) 24.490
CNS0095594Slightly white alabastrum(diploid) 34.032
CNS0095595Whole white alabastrum(diploid) 23.939
CNS0095596Whole white alabastrum(diploid) 34.329
CNS0095597Whole white alabastrum(diploid) 44.675
CNS0095598Silvery flower (diploied) 15.829
CNS0095599Silvery flower (diploied) 245.958
CNS0095600Silvery flower (diploied) 376.883
CNS0095601Golden flower (diploid) 160.734
CNS0095602Golden flower (diploid) 253.575
CNS0095603Golden flower (diploid) 342.654
CNS0095604Slightly white alabastrum(tetraploid) 18.110
CNS0095605Slightly white alabastrum(tetraploid) 28.972
CNS0095606Slightly white alabastrum(tetraploid) 312.344
CNS0095607Whole white alabastrum(tetraploid) 110.000
CNS0095608Whole white alabastrum(tetraploid) 28.499
CNS0095609Whole white alabastrum(tetraploid) 311.271
CNS0095610Silvery flower (tetraploid) 156.460
CNS0095611Silvery flower (tetraploid) 264.716
CNS0095612Silvery flower (tetraploid) 339.129
CNS0095613Golden flower (tetraploid) 1129.128
CNS0095614Golden flower (tetraploid) 277.709
CNS0095615Golden flower (tetraploid) 364.418
CRA001975CRR073297Stem 13.206
CRR073298Stem 24.298
CRR073299Stem 36.141
CRR073300Leaf 18.418
CRR073301Leaf 28.837
CRR073302Leaf 38.642
CRR073303Juvenile bud 112.892
CRR073304Juvenile bud 213.259
CRR073305Juvenile bud 39.137
CRR073306Third green 125.916
CRR073307Third green 231.620
CRR073308Third green 316.196
CRR073309Second white 131.798
CRR073310Second white 238.249
CRR073311Second white 326.006
CRR073312Silver flowering 126.403
CRR073313Silver flowering 226.496
CRR073314Silver flowering 329.646
CRR073315Gold flowering 14.073
CRR073316Gold flowering 25.552
CRR073317Gold flowering 33.491
CRR073318Tawny withering 11.364
CRR073319Tawny withering 23.694
CRR073320Tawny withering 32.080