Detail information of GWHGAAZE033154


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010092050.11.9162E-12940S ribosomal protein S9-2 [Morus notabilis]
COGYP_001434772.13E-3530S ribosomal protein S4
Swissprottr|Q9FLF0|RS92_ARATH2E-11940S ribosomal protein S9-2
trEMBLtr|W9QQ56|W9QQ56_9ROSA7E-13040S ribosomal protein S9-2 {ECO:0000313|EMBL:EXB49964.1}
TAIR10AT5G39850.15E-91Ribosomal protein S4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene18946001895925+
GWHAAZE00000094mRNA18946001895925+
GWHAAZE00000094exon18946001894979+
GWHAAZE00000094exon18957391895925+
GWHAAZE00000094CDS18946001894979+
GWHAAZE00000094CDS18957391895925+
Transcript Sequence

Network for GWHGAAZE033154

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00163.20Ribosomal_S46541.30E-06
PF01479.26S4991428.80E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02997RP-S9e, RPS9 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003723molecular_functionRNA binding
GO:0019843molecular_functionrRNA binding
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf792.332
SRR3591706second leaf354.754
SRR3591707mature leaf155.836
SRR3591708Shoot apex1005.326
SRR3591709Stem381.008
SRR3591710White floral bud310.617
SRR3591711White flower422.566
SRR3591712Green floral bud700.222
SRR3591713Yellow flower247.540
SRP173429 SRR8316895Juvenile bud stage 301.112
SRR8316896Juvenile bud stage 392.707
SRR8316897Juvenile bud stage 212.610
SRR8316894Third green stage 167.256
SRR8316900Third green stage 589.113
SRR8316901Third green stage 549.470
SRR8316898Complete white stage 106.840
SRR8316899Complete white stage 502.365
SRR8316903Complete white stage 139.897
SRR8316902Silver flowering stage100.308
SRR8316904Silver flowering stage102.791
SRR8316905Silver flowering stage49.338
SRR8316906Gold flowering stage 164.747
SRR8316907Gold flowering stage 162.862
SRR8316908Gold flowering stage 221.536
SRP132670SRR6706286Control623.933
SRR6706287Light intensity 50%656.241
SRR6706288Light intensity 20%726.801
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1628.476
CNS0095593Slightly white alabastrum(diploid) 2781.595
CNS0095594Slightly white alabastrum(diploid) 3652.705
CNS0095595Whole white alabastrum(diploid) 2554.199
CNS0095596Whole white alabastrum(diploid) 3683.475
CNS0095597Whole white alabastrum(diploid) 4426.032
CNS0095598Silvery flower (diploied) 1302.556
CNS0095599Silvery flower (diploied) 2280.954
CNS0095600Silvery flower (diploied) 3202.371
CNS0095601Golden flower (diploid) 1238.684
CNS0095602Golden flower (diploid) 2193.780
CNS0095603Golden flower (diploid) 3183.103
CNS0095604Slightly white alabastrum(tetraploid) 1568.155
CNS0095605Slightly white alabastrum(tetraploid) 2600.393
CNS0095606Slightly white alabastrum(tetraploid) 3652.551
CNS0095607Whole white alabastrum(tetraploid) 1305.477
CNS0095608Whole white alabastrum(tetraploid) 2305.281
CNS0095609Whole white alabastrum(tetraploid) 3528.903
CNS0095610Silvery flower (tetraploid) 1226.328
CNS0095611Silvery flower (tetraploid) 2192.445
CNS0095612Silvery flower (tetraploid) 3131.874
CNS0095613Golden flower (tetraploid) 1125.858
CNS0095614Golden flower (tetraploid) 2171.225
CNS0095615Golden flower (tetraploid) 371.124
CRA001975CRR073297Stem 1443.144
CRR073298Stem 2465.244
CRR073299Stem 3526.830
CRR073300Leaf 1524.534
CRR073301Leaf 2555.590
CRR073302Leaf 3694.541
CRR073303Juvenile bud 1566.809
CRR073304Juvenile bud 2476.813
CRR073305Juvenile bud 3469.580
CRR073306Third green 199.287
CRR073307Third green 2106.108
CRR073308Third green 396.257
CRR073309Second white 1108.359
CRR073310Second white 267.490
CRR073311Second white 347.825
CRR073312Silver flowering 182.443
CRR073313Silver flowering 2153.335
CRR073314Silver flowering 382.445
CRR073315Gold flowering 1265.184
CRR073316Gold flowering 2236.892
CRR073317Gold flowering 3252.869
CRR073318Tawny withering 1476.263
CRR073319Tawny withering 2393.886
CRR073320Tawny withering 3471.315