Gene detail

Detail information of GWHGAAZE033159

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI34957.3	0	unnamed protein product [Vitis vinifera]
COG	YP_004271427.1	1E-24	peroxidase
Swissprot	tr\|Q9SGH6\|DOX1_ARATH	0	Alpha-dioxygenase 1 (Precursor)
trEMBL	tr\|D7TWT2\|D7TWT2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI34957.3}
TAIR10	AT3G01420.1	0	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	2127725	2135391	+
GWHAAZE00000094	mRNA	2127725	2135391	+
GWHAAZE00000094	exon	2127725	2128031	+
GWHAAZE00000094	exon	2129146	2129295	+
GWHAAZE00000094	exon	2129415	2129551	+
GWHAAZE00000094	exon	2129977	2130190	+
GWHAAZE00000094	exon	2130279	2130424	+
GWHAAZE00000094	exon	2130648	2130875	+
GWHAAZE00000094	exon	2131593	2131795	+
GWHAAZE00000094	exon	2134337	2134580	+
GWHAAZE00000094	exon	2135163	2135391	+
GWHAAZE00000094	five_prime_UTR	2127725	2127800	+
GWHAAZE00000094	CDS	2127801	2128031	+
GWHAAZE00000094	CDS	2129146	2129295	+
GWHAAZE00000094	CDS	2129415	2129551	+
GWHAAZE00000094	CDS	2129977	2130190	+
GWHAAZE00000094	CDS	2130279	2130424	+
GWHAAZE00000094	CDS	2130648	2130875	+
GWHAAZE00000094	CDS	2131593	2131795	+
GWHAAZE00000094	CDS	2134337	2134580	+
GWHAAZE00000094	CDS	2135163	2135391	+

Transcript Sequence
>GWHTAAZE033198 AGGTTACTTTGTTGTCTAATGCAAGCCTCATTGGAAGTTTGGATATATCATTTAACATGCAATTGAATATAATTAAATGCAGATTATTCACTCGATTGATAAGTTGGGGATATGGCATCGTTTACCGGTATTCATGGGCTTATTTTATCTTGCAATTCGTCGCCACCTTCACCAGACATACAACTTGTTTAATGTCGGTAATACTCCGGCGGGTGACAGATTTAACTCCAATAGAGATAATGAAACTGCCGGCAGCCAAGGAACCTTTTTTGGCAGGAACATTCTTCCTCGTGACAACAATGATAAGGTAATGAGGCCAGATCCTATGGTAGTTGCGACAAAGCTTTTGGCACGTCGAGAACTTATAGACACGGGAAAACAATTCAACGTGATAGCAGTTTCTTGGATACAATTTATGATACATGACTGGATTGACCACTTAGAGGATACTCAGCAAATTGAGCTAATTGCACCTGAAGAAGTTGCAAGTGAATGTCCCCTTAAATCCTTCAAGTTTTATAAGACGAAGGAGGTTCCTACAGGTGTATCTGATGGTATTGAAAGTGGGCACTTGAATACTCGAACACCTTGGTGGGATGGAAGTGTAATATATGGAAGCAACAAAAAAATGTCACAAAAGGTAAGAACTTTTAAGGATGGGAAGCTTAAAATATCAGACGACGACCTTCTTCTTCATGACGAAAACGGTATTGCCATCTCTGGTGATATTCGCAACAGTTGGACTGGCGTCTCGGTATTGCAGGCTCTCTTTATAAAAGAACATAATGCAGTTTGTGAAGTCTTGAAGATGGAATATCCCAAACTAGACGATGAACAATTGTACCGTCATGCAGCACTAGTGACGTCTGCTGTAATCGCAAAAGTACATACAATTGATTGGACCGTTGAGCTTCTCAAAAATAACACATTACTTGCTGGAATGCGAGCCAACTGGTACGGATTATTGGGGAAGAGATTTAAGGATATATTTGGCCATGTTGGTGGGCTCATTTTGGGAGGGATTGTGGGTTTAAAGAAGACCGAGAATTATGGTGTACCATATTCGTTGACCGAGGAATTTACCAGCGTTTATAGGATGCACTCGCTTCTACCCGATCACCTCCTTCTTAGGAACATCAATGCAGTACCGGGACGCAACAAATATCCACCGTTGATTAAAGAGGTTGAAATGTCCAATCTGGTTGGAGTTGAGGGAGAGAAGACTTTATCGGAAATTGGATTTAAAAGGATGATGGTTTCAATGGGCCACCAAGCAAGTGGGGCACTTGTGCTTTGGAACTATCCAGTGTGGCTCAGGGACATTATTCCACAAGATATGGACGGTGAAAATAGACCTGATCGAATTGACCTACTTGCTCTTGAACTTTTTCGGGATCGAGAGAGGAAAGTTGCCAGATACAATGACTTTCGTAGGTCCCTCTTATTGATTCCTATCTCCAAATGGGATGATCTGACGGATGACAAGGAGGCTATCAATATACTTAAAGAGGTTTACGGTGATGATGTGGAGGAGCTTGATTTGTTAGTAGGACTCATGGCAGAGAAGAAGATAAAGGGTTTTGCAATAAGCGAGACTGCTTTTATTATATTTCTCTTGATGGCATCAAGGAGGCTTGAAGCAGATAAATTCTTTACAAGCAATTACAATGAGGAGACATACACAAAGAAAGGACTAAGTTGGGTTAATTCCACAGAAAGCCTAAAAGATGTATTGGTTCACCATTACCCTGATGTTACAAAGACGTGGATCAACTCCAACAGTGCATTCAGTGTGTGGGACGACTCCCCTCCAAAACATTTCTCAGATCTAATTCCTTTATATCTTCGTCTTCCTTAA

Network for GWHGAAZE033159

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03098.16	An_peroxidase	52	561	1.00E-106

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10529	DOX	alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	1.073
	SRR3591708	Shoot apex	0.039
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	1.128
	SRR3591711	White flower	2.429
	SRR3591712	Green floral bud	0.242
	SRR3591713	Yellow flower	2.461
SRP173429	SRR8316895	Juvenile bud stage	2.320
	SRR8316896	Juvenile bud stage	2.447
	SRR8316897	Juvenile bud stage	1.456
	SRR8316894	Third green stage	0.544
	SRR8316900	Third green stage	1.107
	SRR8316901	Third green stage	1.672
	SRR8316898	Complete white stage	0.829
	SRR8316899	Complete white stage	1.370
	SRR8316903	Complete white stage	1.315
	SRR8316902	Silver flowering stage	0.706
	SRR8316904	Silver flowering stage	0.856
	SRR8316905	Silver flowering stage	0.300
	SRR8316906	Gold flowering stage	1.558
	SRR8316907	Gold flowering stage	0.636
	SRR8316908	Gold flowering stage	5.308
SRP132670	SRR6706286	Control	0.782
	SRR6706287	Light intensity 50%	0.923
	SRR6706288	Light intensity 20%	1.007
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.837
	CNS0095593	Slightly white alabastrum(diploid) 2	1.274
	CNS0095594	Slightly white alabastrum(diploid) 3	3.542
	CNS0095595	Whole white alabastrum(diploid) 2	1.430
	CNS0095596	Whole white alabastrum(diploid) 3	2.103
	CNS0095597	Whole white alabastrum(diploid) 4	3.257
	CNS0095598	Silvery flower (diploied) 1	4.796
	CNS0095599	Silvery flower (diploied) 2	2.733
	CNS0095600	Silvery flower (diploied) 3	1.030
	CNS0095601	Golden flower (diploid) 1	4.315
	CNS0095602	Golden flower (diploid) 2	2.746
	CNS0095603	Golden flower (diploid) 3	2.753
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.530
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.344
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.825
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.316
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.344
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.645
	CNS0095610	Silvery flower (tetraploid) 1	16.910
	CNS0095611	Silvery flower (tetraploid) 2	8.777
	CNS0095612	Silvery flower (tetraploid) 3	12.422
	CNS0095613	Golden flower (tetraploid) 1	9.961
	CNS0095614	Golden flower (tetraploid) 2	17.461
	CNS0095615	Golden flower (tetraploid) 3	5.817
CRA001975	CRR073297	Stem 1	1.354
	CRR073298	Stem 2	1.702
	CRR073299	Stem 3	0.627
	CRR073300	Leaf 1	0.456
	CRR073301	Leaf 2	0.891
	CRR073302	Leaf 3	0.145
	CRR073303	Juvenile bud 1	0.420
	CRR073304	Juvenile bud 2	0.743
	CRR073305	Juvenile bud 3	0.364
	CRR073306	Third green 1	0.484
	CRR073307	Third green 2	0.390
	CRR073308	Third green 3	0.441
	CRR073309	Second white 1	0.885
	CRR073310	Second white 2	1.227
	CRR073311	Second white 3	0.065
	CRR073312	Silver flowering 1	0.024
	CRR073313	Silver flowering 2	0.316
	CRR073314	Silver flowering 3	0.030
	CRR073315	Gold flowering 1	17.232
	CRR073316	Gold flowering 2	10.586
	CRR073317	Gold flowering 3	8.436
	CRR073318	Tawny withering 1	1.854
	CRR073319	Tawny withering 2	4.240
	CRR073320	Tawny withering 3	1.988