Gene detail

Detail information of GWHGAAZE033160

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI34957.3	0	unnamed protein product [Vitis vinifera]
COG	NP_864006.1	3E-20	peroxidase
Swissprot	tr\|Q9SGH6\|DOX1_ARATH	0	Alpha-dioxygenase 1 (Precursor)
trEMBL	tr\|D7TWT2\|D7TWT2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI34957.3}
TAIR10	AT3G01420.1	2E-174	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	2177160	2182741	+
GWHAAZE00000094	mRNA	2177160	2182741	+
GWHAAZE00000094	exon	2177160	2177384	+
GWHAAZE00000094	exon	2178819	2178955	+
GWHAAZE00000094	exon	2179495	2179708	+
GWHAAZE00000094	exon	2179796	2179941	+
GWHAAZE00000094	exon	2180159	2180386	+
GWHAAZE00000094	exon	2180815	2181061	+
GWHAAZE00000094	exon	2181752	2181945	+
GWHAAZE00000094	exon	2182513	2182741	+
GWHAAZE00000094	CDS	2177160	2177384	+
GWHAAZE00000094	CDS	2178819	2178955	+
GWHAAZE00000094	CDS	2179495	2179708	+
GWHAAZE00000094	CDS	2179796	2179941	+
GWHAAZE00000094	CDS	2180159	2180386	+
GWHAAZE00000094	CDS	2180815	2181061	+
GWHAAZE00000094	CDS	2181752	2181945	+
GWHAAZE00000094	CDS	2182513	2182741	+

Transcript Sequence
>GWHTAAZE033199 ATTATTCACTCGATTGATAAGTTGGGGATATGGCATCGTTTACCCGTATTCATGGGCTTATTTTACCTTGCAATTCGTCGCCACCTTCACCAGACATACAACTTGTTTAATGTCGGTAATACTCCGGCGGGTGATAGATTTAACTCCAATAGATATAATGAAACTGCCGGCAGCCAAGGAACCTTTTTTGGCAGGAACATTCTTCCTCGTGACCACAATGATAAGATTGAGCTAATTGCACCCGAAGAAGTTGCAAGTGAATGTCCCCTTAAATCCTTCAAGTTTTATAAGACAAAGGAGGTTCCTACAGGCGTATCTGATGGGATTAAAAGTGGGCACTTGAATACTCGAACACCTTGGTGGGATGGAAGTGAAATATATGGAAGCAACAAAAAAATGTCACAAAAGGTAAGAACTTTTAAGGATGGGAAGCTTAAAATATCAGACGACGGCCTTCTTCTTCATGACGAAAACGGTATTGCCATCTCCGGTGATATTCGCAACAATTGGGCTGAAGTCTCAGTATTGCAGGGTTTCTTTATAAAAGAACATAATGCAATTTGTGAAGTCTTGAAGAAGGAATATCCCGAATTAGACGATGAACAATTGTACTATCACGCAGGACTAGTGACATCAGTTGTAATCGCAAAAGTACATACAATTGATTGGACTGTTGAGCTTCTCAAAAATAACACATTACTTGCTGGAATGCGAGCCAACTGGTACGGATTATTGGGGAAGAGATTTAAGGATATATTTGGGCATGTTGGTGGGCTCGTTTTGGGAGGGATTGTGGGTTTAAAGAAGCCCGAGAATTATGGTGTACCATATTCCTTGACCGAGGAGTTTACCAGCGTTTATAGGATGCACTCGCTTCTACCCGATCACCTCCTTCTTAGGAACATCAATGCAGTACCGGGACCCAACAAATCTCCACCGTTGATTAAAGAGGTTGAAATATCAAATCTGGCTGGACCTGAGGGAGAGAAGACCTTATTAGAAATTAGATTTAAAAGGATGATGGTTTCAATGGGCCACCAAGCAAGCGGGGCGCTTGTGCTTTGGAATTATCCGGTGTGGCTTAGGGACATTATTCCACAAGATATCGACGGTAGAGATAGACCTGATCGAATTGACCTACCTGCCCTTGAAAGTAAGCATAATACTAACTCATTTAGATCATTAAATTTTGTATTTTCTCTCTTATTGATTCCTATCTCCAAATGGGATGATCTGACGGATGACAAGGAGGCTATCAATATACTTGAAGAGGTGTACGGTGATGATGTGGATGAGCTTGATTTGTTAGTGGGACTCATGGCAGAGAAAAAGATCAAGGGTTTTGTAATAAGCAAGACTGCTTTTATTATATTTCTCTTAATGGCATCAAGGAGGTTAGAAGCAGATAGATTCTTTACAAGCGATTACAATGAGGAGACATACACAAAGAAAGGACTGAGTTGGGTTAATTCGACAGAAAGCCTGAAAGATGTATTGGATCGCCATTACCCTGATGTTACAAAGACGTGGATCAACTCCAAAAGTGCATTCAGTGTGTGGGACGACTCCTCTCCAAAACATTTCTCAAATCTAATTCCTTTATATCTTCGTCTTCCTTAA

Network for GWHGAAZE033160

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0238

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03098.16	An_peroxidase	94	507	1.40E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10529	DOX	alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.070
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	14.336
	SRR3591711	White flower	18.931
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	14.359
SRP173429	SRR8316895	Juvenile bud stage	0.027
	SRR8316896	Juvenile bud stage	0.021
	SRR8316897	Juvenile bud stage	0.049
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.015
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	5.348
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	6.849
	SRR8316902	Silver flowering stage	74.897
	SRR8316904	Silver flowering stage	91.369
	SRR8316905	Silver flowering stage	63.162
	SRR8316906	Gold flowering stage	181.499
	SRR8316907	Gold flowering stage	171.206
	SRR8316908	Gold flowering stage	299.230
SRP132670	SRR6706286	Control	1.364
	SRR6706287	Light intensity 50%	3.084
	SRR6706288	Light intensity 20%	0.012
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.024
	CNS0095593	Slightly white alabastrum(diploid) 2	0.015
	CNS0095594	Slightly white alabastrum(diploid) 3	0.082
	CNS0095595	Whole white alabastrum(diploid) 2	0.130
	CNS0095596	Whole white alabastrum(diploid) 3	0.187
	CNS0095597	Whole white alabastrum(diploid) 4	0.187
	CNS0095598	Silvery flower (diploied) 1	14.278
	CNS0095599	Silvery flower (diploied) 2	16.678
	CNS0095600	Silvery flower (diploied) 3	55.117
	CNS0095601	Golden flower (diploid) 1	37.006
	CNS0095602	Golden flower (diploid) 2	31.654
	CNS0095603	Golden flower (diploid) 3	31.806
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.104
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.202
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.016
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.182
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.183
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.111
	CNS0095610	Silvery flower (tetraploid) 1	172.387
	CNS0095611	Silvery flower (tetraploid) 2	101.716
	CNS0095612	Silvery flower (tetraploid) 3	224.109
	CNS0095613	Golden flower (tetraploid) 1	224.386
	CNS0095614	Golden flower (tetraploid) 2	160.852
	CNS0095615	Golden flower (tetraploid) 3	150.601
CRA001975	CRR073297	Stem 1	0.032
	CRR073298	Stem 2	0.030
	CRR073299	Stem 3	0.004
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.005
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.202
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	2.766
	CRR073307	Third green 2	1.824
	CRR073308	Third green 3	2.356
	CRR073309	Second white 1	6.856
	CRR073310	Second white 2	21.794
	CRR073311	Second white 3	17.219
	CRR073312	Silver flowering 1	6.336
	CRR073313	Silver flowering 2	5.773
	CRR073314	Silver flowering 3	8.012
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.012
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.219
	CRR073319	Tawny withering 2	0.144
	CRR073320	Tawny withering 3	0.005