Gene detail

Detail information of GWHGAAZE033162

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU35231.1	0	hypothetical protein MIMGU_mgv1a011203mg [Erythranthe guttata]
Swissprot	tr\|P93798\|SNAA_VITVI	1E-159	Alpha-soluble NSF attachment protein
trEMBL	tr\|A0A022R4P1\|A0A022R4P1_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU35231.1}
TAIR10	AT3G56190.1	9E-99	alpha-soluble NSF attachment protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	2213496	2219526	+
GWHAAZE00000094	mRNA	2213496	2219526	+
GWHAAZE00000094	exon	2213496	2213640	+
GWHAAZE00000094	exon	2214254	2214303	+
GWHAAZE00000094	exon	2214434	2214506	+
GWHAAZE00000094	exon	2215694	2215773	+
GWHAAZE00000094	exon	2215921	2216072	+
GWHAAZE00000094	exon	2217108	2217267	+
GWHAAZE00000094	exon	2217346	2217393	+
GWHAAZE00000094	exon	2218021	2218101	+
GWHAAZE00000094	exon	2219446	2219526	+
GWHAAZE00000094	CDS	2213496	2213640	+
GWHAAZE00000094	CDS	2214254	2214303	+
GWHAAZE00000094	CDS	2214434	2214506	+
GWHAAZE00000094	CDS	2215694	2215773	+
GWHAAZE00000094	CDS	2215921	2216072	+
GWHAAZE00000094	CDS	2217108	2217267	+
GWHAAZE00000094	CDS	2217346	2217393	+
GWHAAZE00000094	CDS	2218021	2218101	+
GWHAAZE00000094	CDS	2219446	2219526	+

Transcript Sequence
>GWHTAAZE033201 ATGGCAGATCAAATAGCCAAAGGGGAAGATTTCGAGAGGAAAGCAGAGAAGAAGCTTGGCGGCTGGGGCCTCTTCGGTTCTAAATACGAAGACGCCGCTGATTTGTTCGAGAAATCTGCCAATTCCTTCAAACTCGCCAAATCCTGGGACCAAGCTGGAGCCATATATGTCAAGTTGGCAAACTGTCACTTAAAGTTGGATAGCAAACATGAAGCTGCTAATGCTTATGCTGATGCTGGTCATTGTTACAAGAAAACAAATTCTAAAGAATGCATATCTTGCCTAGAGCAATCAGTAAATCTCTTCTTGGAGATTGGGAGGCTCAATATGTCTGCAAGATACTACAAGGAAATTGCTGAAATATGTGAGCAAGATCAAAATTTGGAGCAGGCTATTTATTACTATGAAAAAGCTGCTGATCTTTTTCAAAGTGAAGATGTAACAACTTCTGCAAATCAGTGCAGGCAGAAAATTGCTCAATTTGCTGCTCAACTGGAACATTATCAGAAAGCGATTGACATTTATGAGGATATAGCACGACAGTCCCTCAACAATCACTTACTGAAGTATGGAGTTAAAGGACATCTTCTTAATGCTGGCATTTGCCAACTCTGTAAAGGCGATGTTGTTGCTATTACCAATGCATTGGAGAAATATCAGGAATTGGATCCTACTTTTTCAGGTTCTCGTGAATACAGATTGTTAGCGGATTTGGCTGCTGCGGTTGATGAAGAAGATATTGCAAAGTTTACCGATGCTATCAAGGAATTTGATAGCATGACCCAGCTGGATGCATGGAAGACGACCCTTCTGTTGAGAGTGAAGGAAGCACTCAAGGCCAAAGAGTTGGAGGAGGACGATCTTACTTAA

Network for GWHGAAZE033162

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14938.7	SNAP	7	278	1.10E-109

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15296	NAPA, SNAPA, SEC17	Autophagy - yeast	map04138
K15296	NAPA, SNAPA, SEC17	Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	185.590
	SRR3591706	second leaf	80.258
	SRR3591707	mature leaf	60.998
	SRR3591708	Shoot apex	116.867
	SRR3591709	Stem	160.004
	SRR3591710	White floral bud	186.065
	SRR3591711	White flower	172.036
	SRR3591712	Green floral bud	172.879
	SRR3591713	Yellow flower	153.700
SRP173429	SRR8316895	Juvenile bud stage	68.310
	SRR8316896	Juvenile bud stage	95.080
	SRR8316897	Juvenile bud stage	75.745
	SRR8316894	Third green stage	41.701
	SRR8316900	Third green stage	109.418
	SRR8316901	Third green stage	102.719
	SRR8316898	Complete white stage	70.868
	SRR8316899	Complete white stage	165.160
	SRR8316903	Complete white stage	98.261
	SRR8316902	Silver flowering stage	62.176
	SRR8316904	Silver flowering stage	90.394
	SRR8316905	Silver flowering stage	42.618
	SRR8316906	Gold flowering stage	124.560
	SRR8316907	Gold flowering stage	113.314
	SRR8316908	Gold flowering stage	153.041
SRP132670	SRR6706286	Control	97.489
	SRR6706287	Light intensity 50%	99.968
	SRR6706288	Light intensity 20%	111.466
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	104.025
	CNS0095593	Slightly white alabastrum(diploid) 2	107.886
	CNS0095594	Slightly white alabastrum(diploid) 3	102.462
	CNS0095595	Whole white alabastrum(diploid) 2	100.349
	CNS0095596	Whole white alabastrum(diploid) 3	100.542
	CNS0095597	Whole white alabastrum(diploid) 4	104.157
	CNS0095598	Silvery flower (diploied) 1	88.183
	CNS0095599	Silvery flower (diploied) 2	91.541
	CNS0095600	Silvery flower (diploied) 3	140.312
	CNS0095601	Golden flower (diploid) 1	72.390
	CNS0095602	Golden flower (diploid) 2	118.432
	CNS0095603	Golden flower (diploid) 3	116.119
	CNS0095604	Slightly white alabastrum(tetraploid) 1	139.793
	CNS0095605	Slightly white alabastrum(tetraploid) 2	128.745
	CNS0095606	Slightly white alabastrum(tetraploid) 3	161.758
	CNS0095607	Whole white alabastrum(tetraploid) 1	103.170
	CNS0095608	Whole white alabastrum(tetraploid) 2	113.240
	CNS0095609	Whole white alabastrum(tetraploid) 3	132.243
	CNS0095610	Silvery flower (tetraploid) 1	141.449
	CNS0095611	Silvery flower (tetraploid) 2	140.065
	CNS0095612	Silvery flower (tetraploid) 3	146.759
	CNS0095613	Golden flower (tetraploid) 1	105.434
	CNS0095614	Golden flower (tetraploid) 2	113.710
	CNS0095615	Golden flower (tetraploid) 3	109.060
CRA001975	CRR073297	Stem 1	74.852
	CRR073298	Stem 2	68.348
	CRR073299	Stem 3	82.935
	CRR073300	Leaf 1	81.246
	CRR073301	Leaf 2	83.291
	CRR073302	Leaf 3	87.899
	CRR073303	Juvenile bud 1	114.742
	CRR073304	Juvenile bud 2	106.705
	CRR073305	Juvenile bud 3	95.538
	CRR073306	Third green 1	78.100
	CRR073307	Third green 2	97.727
	CRR073308	Third green 3	81.365
	CRR073309	Second white 1	76.565
	CRR073310	Second white 2	67.106
	CRR073311	Second white 3	55.700
	CRR073312	Silver flowering 1	53.521
	CRR073313	Silver flowering 2	62.856
	CRR073314	Silver flowering 3	56.420
	CRR073315	Gold flowering 1	57.654
	CRR073316	Gold flowering 2	59.373
	CRR073317	Gold flowering 3	50.299
	CRR073318	Tawny withering 1	105.457
	CRR073319	Tawny withering 2	95.125
	CRR073320	Tawny withering 3	110.612