Gene detail

Detail information of GWHGAAZE033168

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074356.1	0	PREDICTED: eukaryotic initiation factor 4A-3-like [Sesamum indicum]
COG	YP_007250064.1	3E-95	DNA/RNA helicase, superfamily II
Swissprot	tr\|P41380\|IF4A3_NICPL	0	Eukaryotic initiation factor 4A-3
trEMBL	tr\|F6HHF5\|F6HHF5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51651.1}
TAIR10	AT3G19760.1	0	eukaryotic initiation factor 4A-III

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	2384558	2389102	+
GWHAAZE00000094	mRNA	2384558	2389102	+
GWHAAZE00000094	exon	2384558	2384874	+
GWHAAZE00000094	exon	2386887	2387127	+
GWHAAZE00000094	exon	2387262	2387342	+
GWHAAZE00000094	exon	2387805	2387912	+
GWHAAZE00000094	exon	2388038	2388157	+
GWHAAZE00000094	exon	2388357	2388515	+
GWHAAZE00000094	exon	2388761	2388847	+
GWHAAZE00000094	exon	2388989	2389102	+
GWHAAZE00000094	CDS	2384558	2384874	+
GWHAAZE00000094	CDS	2386887	2387127	+
GWHAAZE00000094	CDS	2387262	2387342	+
GWHAAZE00000094	CDS	2387805	2387912	+
GWHAAZE00000094	CDS	2388038	2388157	+
GWHAAZE00000094	CDS	2388357	2388515	+
GWHAAZE00000094	CDS	2388761	2388847	+
GWHAAZE00000094	CDS	2388989	2389102	+

Transcript Sequence
>GWHTAAZE033207 ATGGCGTTAGTGTTGCAACAGCATCTCAACAACAGAGGAGGGCGGAGGGTGGTGGCGGAAGATGACTCGAAGCTGCTGATATTTGAGACAACAAAGGGGGTGGAACCGGTGATGAGCTTCGATGAGATGGGGTTAAAGGACGATTTACTGAGAGGAATATACCAATGTGCCATGGAGAAACCGTCAGCTGTTCAGCAGAGAGCTTTGCGTCCCATCATATCCGGTCGAGACGTCATCGCCCAGGCCCAGTCTGGTACCGGCAAAACCTCCATGATCTCGCTCGCCCTTTGCCAGATCGTCGATACCACCTCCACTGAAGTCCAAGCTTTGATCTTGTCACCTACAAGGGAGCTAGCAGCTCAGACTGAGAAATTTATATTGACAGTTGGTGATTTCATTAATATAAAGGCACATGCATGTATTGGTGGCAAAAGCATTGGCGAGGATATCAGGAAGCTAGAACATGGAGTTCACATTGTATCTGGAACTCCAGGCAGAGTTTCAGACATGATCAAAAGGAGAACATTACGAACTAGAGGCATAAAAATTTTGGTTCTTGATGAATCAGATGAGATGCTGAACCGAGGTTTTAAGGATCAAATTTATGATGTCTACAGATATCTTCCACCAGAGCTTCAGGTTGTTTTGGTGTCTGCCACCCTTCCTAGCGAAATTTTGGAGGTGACAAGCAAATTTATGACAGACCCTGTGAGAATCCTTGTGAAACGTGATGAGTTGACTCTAGAGGGTATCAAGCAGTTTTTTGTTGCAGTAGAAAGAGAAGATTGGAAATTTGATACTTTGTGTGATCTCTATGATACCCTTACGATCACCCAGTGTGTTATTTTCTGCAACACGAAGCGGAAGGTGGATTGGTTGAGTGAGAAGATGAGAGACAATAACTTTACAGTGTCGTCGATGCACGCCGACATGCCTCAAAAGGAGAGAGATGCAATAATGGGAGTGTTCCGGTCTGGCACAGCTCGTGTTCTGATTACAACAGATTTACTGTCTAGGGGGATGGACGTATCCTTGGTGATCAACTATGATCTTCCTAACGACCGAGAGGTTTACATCCATCGCATTGGCCGCTCTGGTCGGTTCGGACGCAAGGGTGTTGCAATAAATTTTGTGAAAAATGATGATATTAAGATTCTACGCGACATAGAGCAGTACTACAGTACCCAGATTGACGAAATGCCTATGAATGTTGCTGATTTGATATAG

Network for GWHGAAZE033168

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0227

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	63	225	1.70E-41
PF00271.32	Helicase_C	264	369	6.10E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13025	EIF4A3, FAL1	Spliceosome	map03040
		RNA transport	map03013
		mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.040
	SRR3591706	second leaf	3.611
	SRR3591707	mature leaf	2.234
	SRR3591708	Shoot apex	22.861
	SRR3591709	Stem	5.975
	SRR3591710	White floral bud	9.969
	SRR3591711	White flower	8.454
	SRR3591712	Green floral bud	12.016
	SRR3591713	Yellow flower	1.264
SRP173429	SRR8316895	Juvenile bud stage	22.675
	SRR8316896	Juvenile bud stage	38.514
	SRR8316897	Juvenile bud stage	5.750
	SRR8316894	Third green stage	15.025
	SRR8316900	Third green stage	40.757
	SRR8316901	Third green stage	35.018
	SRR8316898	Complete white stage	9.627
	SRR8316899	Complete white stage	41.335
	SRR8316903	Complete white stage	12.791
	SRR8316902	Silver flowering stage	4.813
	SRR8316904	Silver flowering stage	6.132
	SRR8316905	Silver flowering stage	1.903
	SRR8316906	Gold flowering stage	7.150
	SRR8316907	Gold flowering stage	6.372
	SRR8316908	Gold flowering stage	3.454
SRP132670	SRR6706286	Control	39.949
	SRR6706287	Light intensity 50%	41.136
	SRR6706288	Light intensity 20%	42.357
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.709
	CNS0095593	Slightly white alabastrum(diploid) 2	31.096
	CNS0095594	Slightly white alabastrum(diploid) 3	28.557
	CNS0095595	Whole white alabastrum(diploid) 2	31.849
	CNS0095596	Whole white alabastrum(diploid) 3	31.193
	CNS0095597	Whole white alabastrum(diploid) 4	23.218
	CNS0095598	Silvery flower (diploied) 1	19.470
	CNS0095599	Silvery flower (diploied) 2	16.227
	CNS0095600	Silvery flower (diploied) 3	22.437
	CNS0095601	Golden flower (diploid) 1	19.594
	CNS0095602	Golden flower (diploid) 2	20.854
	CNS0095603	Golden flower (diploid) 3	17.981
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.940
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.755
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.200
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.991
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.071
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.544
	CNS0095610	Silvery flower (tetraploid) 1	13.688
	CNS0095611	Silvery flower (tetraploid) 2	16.641
	CNS0095612	Silvery flower (tetraploid) 3	12.035
	CNS0095613	Golden flower (tetraploid) 1	10.114
	CNS0095614	Golden flower (tetraploid) 2	11.722
	CNS0095615	Golden flower (tetraploid) 3	7.194
CRA001975	CRR073297	Stem 1	34.083
	CRR073298	Stem 2	29.532
	CRR073299	Stem 3	34.706
	CRR073300	Leaf 1	36.982
	CRR073301	Leaf 2	31.210
	CRR073302	Leaf 3	35.574
	CRR073303	Juvenile bud 1	31.804
	CRR073304	Juvenile bud 2	27.105
	CRR073305	Juvenile bud 3	27.169
	CRR073306	Third green 1	3.803
	CRR073307	Third green 2	4.242
	CRR073308	Third green 3	5.003
	CRR073309	Second white 1	5.464
	CRR073310	Second white 2	7.372
	CRR073311	Second white 3	9.112
	CRR073312	Silver flowering 1	6.241
	CRR073313	Silver flowering 2	7.503
	CRR073314	Silver flowering 3	6.825
	CRR073315	Gold flowering 1	3.027
	CRR073316	Gold flowering 2	2.838
	CRR073317	Gold flowering 3	2.955
	CRR073318	Tawny withering 1	4.784
	CRR073319	Tawny withering 2	4.136
	CRR073320	Tawny withering 3	3.812