Detail information of GWHGAAZE033172


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004237711.19.56972E-47PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum lycopersicum]
Swissprottr|Q8GXC7|FBK50_ARATH3E-15F-box/kelch-repeat protein At3g06240
trEMBLtr|M0ZS94|M0ZS94_SOLTU4E-48Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400006971}
TAIR10AT3G06240.11E-14F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene24407692442208+
GWHAAZE00000094mRNA24407692442208+
GWHAAZE00000094exon24407692442208+
GWHAAZE00000094CDS24407692442208+
Transcript Sequence

Network for GWHGAAZE033172

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box3436.40E-07
PF07734.14FBA_12523150.00021
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE033172.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3020406080100120140160180200Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf65.687
SRR3591706second leaf36.651
SRR3591707mature leaf43.929
SRR3591708Shoot apex54.314
SRR3591709Stem93.078
SRR3591710White floral bud46.656
SRR3591711White flower47.251
SRR3591712Green floral bud50.928
SRR3591713Yellow flower44.966
SRP173429 SRR8316895Juvenile bud stage 132.910
SRR8316896Juvenile bud stage 165.260
SRR8316897Juvenile bud stage 54.394
SRR8316894Third green stage 59.075
SRR8316900Third green stage 154.778
SRR8316901Third green stage 156.734
SRR8316898Complete white stage 49.987
SRR8316899Complete white stage 181.163
SRR8316903Complete white stage 130.973
SRR8316902Silver flowering stage68.586
SRR8316904Silver flowering stage88.112
SRR8316905Silver flowering stage37.900
SRR8316906Gold flowering stage 152.339
SRR8316907Gold flowering stage 152.954
SRR8316908Gold flowering stage 104.356
SRP132670SRR6706286Control106.454
SRR6706287Light intensity 50%110.450
SRR6706288Light intensity 20%108.877
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1106.269
CNS0095593Slightly white alabastrum(diploid) 295.961
CNS0095594Slightly white alabastrum(diploid) 377.582
CNS0095595Whole white alabastrum(diploid) 280.724
CNS0095596Whole white alabastrum(diploid) 370.995
CNS0095597Whole white alabastrum(diploid) 471.884
CNS0095598Silvery flower (diploied) 177.954
CNS0095599Silvery flower (diploied) 2111.397
CNS0095600Silvery flower (diploied) 3117.634
CNS0095601Golden flower (diploid) 1124.761
CNS0095602Golden flower (diploid) 2120.684
CNS0095603Golden flower (diploid) 3115.476
CNS0095604Slightly white alabastrum(tetraploid) 1113.206
CNS0095605Slightly white alabastrum(tetraploid) 293.598
CNS0095606Slightly white alabastrum(tetraploid) 3159.535
CNS0095607Whole white alabastrum(tetraploid) 169.588
CNS0095608Whole white alabastrum(tetraploid) 262.519
CNS0095609Whole white alabastrum(tetraploid) 3108.031
CNS0095610Silvery flower (tetraploid) 1154.630
CNS0095611Silvery flower (tetraploid) 2116.150
CNS0095612Silvery flower (tetraploid) 3128.999
CNS0095613Golden flower (tetraploid) 1110.858
CNS0095614Golden flower (tetraploid) 2128.661
CNS0095615Golden flower (tetraploid) 3138.181
CRA001975CRR073297Stem 1106.309
CRR073298Stem 286.786
CRR073299Stem 318.005
CRR073300Leaf 1103.270
CRR073301Leaf 2102.181
CRR073302Leaf 317.082
CRR073303Juvenile bud 126.528
CRR073304Juvenile bud 214.712
CRR073305Juvenile bud 339.951
CRR073306Third green 110.479
CRR073307Third green 26.526
CRR073308Third green 311.777
CRR073309Second white 115.053
CRR073310Second white 217.849
CRR073311Second white 318.783
CRR073312Silver flowering 114.958
CRR073313Silver flowering 210.207
CRR073314Silver flowering 317.105
CRR073315Gold flowering 15.647
CRR073316Gold flowering 214.185
CRR073317Gold flowering 35.236
CRR073318Tawny withering 130.875
CRR073319Tawny withering 243.829
CRR073320Tawny withering 332.889