Gene detail

Detail information of GWHGAAZE033174

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011098592.1	1.7203E-151	PREDICTED: aldose 1-epimerase-like [Sesamum indicum]
COG	YP_004538067.1	9E-80	aldose 1-epimerase
trEMBL	tr\|W9RUZ9\|W9RUZ9_9ROSA	3E-144	Aldose 1-epimerase {ECO:0000256\|PIRNR:PIRNR005096}
TAIR10	AT3G47800.1	5E-99	Galactose mutarotase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	2483141	2485094	-
GWHAAZE00000094	mRNA	2483141	2485094	-
GWHAAZE00000094	exon	2483141	2483799	-
GWHAAZE00000094	exon	2484250	2484357	-
GWHAAZE00000094	exon	2484470	2484593	-
GWHAAZE00000094	exon	2484752	2484801	-
GWHAAZE00000094	exon	2484914	2485094	-
GWHAAZE00000094	CDS	2484914	2485094	-
GWHAAZE00000094	CDS	2484752	2484801	-
GWHAAZE00000094	CDS	2484470	2484593	-
GWHAAZE00000094	CDS	2484250	2484357	-
GWHAAZE00000094	CDS	2483141	2483799	-

Transcript Sequence
>GWHTAAZE033213 ATGACAAATGTATCCCTCTGGCTCTGTTGCACCATTCTTTCTTTTGGGATTGTTGTGAATGGTTCAACGTATATTAATGGAGAAGAGGTTGGGTTTTATGAAATAAAGACTGGAAATTTCTCTGTAAAGTTAACGAACTGGGGTGCATCTCTCGTGTCTGTCGTTGTTCCCGACAGATATGGAAACTTGGCTGATGTTGTTCTTGGTTACGATTCAGTCGAAGATTACATGAATGATACACAGTACTTTGGTGCTATTGTGGGTCGGGTTGCTAACTGGATTTCAGGAGCCAGTTTCACCTTAAATGGAATCGTTTACCAGCTAGATAACAACGAGAAAAATAAAACCCTTCATGGTGGGAAGCATGGATTCAATAAAGTTGTTTGGAAGGTGCAAAATCATGTGAAGGATGGCCCCTCTCCTAGTATTACCTTCAGCTATTACAGTCCTGATGGTGATCAAGGATTTCCTGGGGATCTACTTGTCAATGTGACTTATGCTCTCACTGGACCATACAAACTCGAAGTAAACATGGAGGCCAAAGCTCTAAACAAGGCCACTCCAGTGAATCTAGCCCTTCACGCTTACTGGAACCTCGGTGCTCACAAATCTGGCGGCATCCTCTCCCACAAGGTCAAGATATTTGCTTCCCACCTAACTCCCATAGTCTGGTCCATCCCCACCGGCCAAATCCTACCGGTCAAGGGCACACCCTACGACTTCCTTCAACCCCACACTATCACAAGCGTGATGAACGACACTACATTACATGCTCTAATCATCAATCCGCTAAAAGAACTTGTTCCTGACAACGGATACGATGTCAACTATGTGCTTGATGGCGGGGTTGATAAAATGAAGGAAGCGGCTGTAGTGTGTGATGAAAAGTCAGGGAGGGTGGTGGAGCTGTGGACAAGTGCTCCTGGGATGCAGTTTTATACAGGGAATTATGTGAAGAATGTGAAGGGGAAAGGTGATTTTGTTTATGGGGACCATGCTGGTTTGGCTTTGGAGACTCAAGGGTTCCCTGATGCAGTGCATCATCCTAATTTCCCTTTACAGATTGTTGGTCCAGGGGAGGTTTATAGGCATAAGATGGTGTATACTTTTTCAACCAATTAG

Network for GWHGAAZE033174

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01263.21	Aldose_epim	33	369	4.10E-85

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01785	galM, GALM	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010
		Galactose metabolism	map00052

Gene Ontology

GO term	Ontology	Name
GO:0019318	biological_process	hexose metabolic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0016853	molecular_function	isomerase activity
GO:0030246	molecular_function	carbohydrate binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.965
	SRR3591706	second leaf	15.073
	SRR3591707	mature leaf	22.134
	SRR3591708	Shoot apex	13.213
	SRR3591709	Stem	40.490
	SRR3591710	White floral bud	161.546
	SRR3591711	White flower	62.600
	SRR3591712	Green floral bud	60.955
	SRR3591713	Yellow flower	73.181
SRP173429	SRR8316895	Juvenile bud stage	7.206
	SRR8316896	Juvenile bud stage	12.215
	SRR8316897	Juvenile bud stage	8.679
	SRR8316894	Third green stage	7.245
	SRR8316900	Third green stage	14.106
	SRR8316901	Third green stage	14.052
	SRR8316898	Complete white stage	17.209
	SRR8316899	Complete white stage	24.062
	SRR8316903	Complete white stage	29.418
	SRR8316902	Silver flowering stage	27.351
	SRR8316904	Silver flowering stage	29.674
	SRR8316905	Silver flowering stage	17.400
	SRR8316906	Gold flowering stage	58.671
	SRR8316907	Gold flowering stage	52.836
	SRR8316908	Gold flowering stage	75.483
SRP132670	SRR6706286	Control	18.809
	SRR6706287	Light intensity 50%	18.087
	SRR6706288	Light intensity 20%	18.092
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.589
	CNS0095593	Slightly white alabastrum(diploid) 2	13.440
	CNS0095594	Slightly white alabastrum(diploid) 3	16.602
	CNS0095595	Whole white alabastrum(diploid) 2	16.256
	CNS0095596	Whole white alabastrum(diploid) 3	16.347
	CNS0095597	Whole white alabastrum(diploid) 4	21.317
	CNS0095598	Silvery flower (diploied) 1	35.461
	CNS0095599	Silvery flower (diploied) 2	20.858
	CNS0095600	Silvery flower (diploied) 3	34.473
	CNS0095601	Golden flower (diploid) 1	28.283
	CNS0095602	Golden flower (diploid) 2	32.102
	CNS0095603	Golden flower (diploid) 3	31.568
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.002
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.189
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.077
	CNS0095607	Whole white alabastrum(tetraploid) 1	44.581
	CNS0095608	Whole white alabastrum(tetraploid) 2	83.677
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.760
	CNS0095610	Silvery flower (tetraploid) 1	55.994
	CNS0095611	Silvery flower (tetraploid) 2	49.762
	CNS0095612	Silvery flower (tetraploid) 3	61.384
	CNS0095613	Golden flower (tetraploid) 1	63.067
	CNS0095614	Golden flower (tetraploid) 2	64.384
	CNS0095615	Golden flower (tetraploid) 3	94.544
CRA001975	CRR073297	Stem 1	11.741
	CRR073298	Stem 2	9.635
	CRR073299	Stem 3	4.343
	CRR073300	Leaf 1	10.894
	CRR073301	Leaf 2	11.438
	CRR073302	Leaf 3	3.612
	CRR073303	Juvenile bud 1	6.695
	CRR073304	Juvenile bud 2	7.308
	CRR073305	Juvenile bud 3	4.617
	CRR073306	Third green 1	9.166
	CRR073307	Third green 2	6.798
	CRR073308	Third green 3	9.235
	CRR073309	Second white 1	2.919
	CRR073310	Second white 2	11.016
	CRR073311	Second white 3	10.612
	CRR073312	Silver flowering 1	6.536
	CRR073313	Silver flowering 2	4.893
	CRR073314	Silver flowering 3	9.124
	CRR073315	Gold flowering 1	4.204
	CRR073316	Gold flowering 2	5.701
	CRR073317	Gold flowering 3	1.128
	CRR073318	Tawny withering 1	7.263
	CRR073319	Tawny withering 2	11.743
	CRR073320	Tawny withering 3	6.053