Detail information of GWHGAAZE033175


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010228320.17.54957E-80PREDICTED: ubiquitin-conjugating enzyme E2 2-like isoform X2 [Brachypodium distachyon]
Swissprottr|P35130|UBC2_MEDSA2E-75Ubiquitin-conjugating enzyme E2 2
trEMBLtr|V7C975|V7C975_PHAVU4E-80Uncharacterized protein {ECO:0000313|EMBL:ESW25825.1}
TAIR10AT2G02760.15E-59ubiquiting-conjugating enzyme 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene24870442489009-
GWHAAZE00000094mRNA24870442489009-
GWHAAZE00000094exon24870442487172-
GWHAAZE00000094exon24875492487637-
GWHAAZE00000094exon24887542488779-
GWHAAZE00000094exon24888852489009-
GWHAAZE00000094CDS24888852489009-
GWHAAZE00000094CDS24887542488779-
GWHAAZE00000094CDS24875492487637-
GWHAAZE00000094CDS24870442487172-
Transcript Sequence

Network for GWHGAAZE033175

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con8503.20E-05
PF00179.27UQ_con511145.90E-20
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K10573UBE2A, UBC2, RAD6A Ubiquitin mediated proteolysis map04120

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf175.006
SRR3591706second leaf70.709
SRR3591707mature leaf126.015
SRR3591708Shoot apex108.501
SRR3591709Stem323.875
SRR3591710White floral bud240.338
SRR3591711White flower365.541
SRR3591712Green floral bud147.850
SRR3591713Yellow flower416.951
SRP173429 SRR8316895Juvenile bud stage 13.357
SRR8316896Juvenile bud stage 22.411
SRR8316897Juvenile bud stage 49.073
SRR8316894Third green stage 9.927
SRR8316900Third green stage 28.049
SRR8316901Third green stage 29.199
SRR8316898Complete white stage 43.508
SRR8316899Complete white stage 40.330
SRR8316903Complete white stage 58.209
SRR8316902Silver flowering stage52.506
SRR8316904Silver flowering stage68.819
SRR8316905Silver flowering stage41.174
SRR8316906Gold flowering stage 125.244
SRR8316907Gold flowering stage 102.010
SRR8316908Gold flowering stage 272.344
SRP132670SRR6706286Control32.465
SRR6706287Light intensity 50%30.618
SRR6706288Light intensity 20%30.086
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.202
CNS0095593Slightly white alabastrum(diploid) 223.818
CNS0095594Slightly white alabastrum(diploid) 322.203
CNS0095595Whole white alabastrum(diploid) 223.644
CNS0095596Whole white alabastrum(diploid) 328.506
CNS0095597Whole white alabastrum(diploid) 425.978
CNS0095598Silvery flower (diploied) 144.137
CNS0095599Silvery flower (diploied) 230.373
CNS0095600Silvery flower (diploied) 373.541
CNS0095601Golden flower (diploid) 138.512
CNS0095602Golden flower (diploid) 262.961
CNS0095603Golden flower (diploid) 356.262
CNS0095604Slightly white alabastrum(tetraploid) 1122.345
CNS0095605Slightly white alabastrum(tetraploid) 2131.771
CNS0095606Slightly white alabastrum(tetraploid) 3122.492
CNS0095607Whole white alabastrum(tetraploid) 1133.832
CNS0095608Whole white alabastrum(tetraploid) 2133.625
CNS0095609Whole white alabastrum(tetraploid) 3117.569
CNS0095610Silvery flower (tetraploid) 1409.906
CNS0095611Silvery flower (tetraploid) 2390.665
CNS0095612Silvery flower (tetraploid) 3275.783
CNS0095613Golden flower (tetraploid) 1456.563
CNS0095614Golden flower (tetraploid) 2456.208
CNS0095615Golden flower (tetraploid) 3665.258
CRA001975CRR073297Stem 125.349
CRR073298Stem 226.627
CRR073299Stem 320.528
CRR073300Leaf 127.735
CRR073301Leaf 228.427
CRR073302Leaf 328.585
CRR073303Juvenile bud 126.275
CRR073304Juvenile bud 234.141
CRR073305Juvenile bud 321.398
CRR073306Third green 195.734
CRR073307Third green 2111.944
CRR073308Third green 368.433
CRR073309Second white 153.185
CRR073310Second white 270.149
CRR073311Second white 341.844
CRR073312Silver flowering 151.831
CRR073313Silver flowering 249.267
CRR073314Silver flowering 341.390
CRR073315Gold flowering 113.974
CRR073316Gold flowering 226.948
CRR073317Gold flowering 314.264
CRR073318Tawny withering 121.937
CRR073319Tawny withering 226.879
CRR073320Tawny withering 323.399