Detail information of GWHGAAZE033186


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010090344.10hypothetical protein L484_025009 [Morus notabilis]
COGYP_184048.11E-13exosome complex RNA-binding protein Rrp4
trEMBLtr|W9QKH6|W9QKH6_9ROSA0Uncharacterized protein {ECO:0000313|EMBL:EXB39314.1}
TAIR10AT1G03360.11E-124ribosomal RNA processing 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene26680462671212-
GWHAAZE00000094mRNA26680462671212-
GWHAAZE00000094exon26680462668504-
GWHAAZE00000094exon26691872669255-
GWHAAZE00000094exon26695122669577-
GWHAAZE00000094exon26697222669811-
GWHAAZE00000094exon26700032670048-
GWHAAZE00000094exon26701732670279-
GWHAAZE00000094exon26710782671212-
GWHAAZE00000094CDS26710782671212-
GWHAAZE00000094CDS26701732670279-
GWHAAZE00000094CDS26700032670048-
GWHAAZE00000094CDS26697222669811-
GWHAAZE00000094CDS26695122669577-
GWHAAZE00000094CDS26691872669255-
GWHAAZE00000094CDS26680462668504-
Transcript Sequence

Network for GWHGAAZE033186

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0245


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF15985.6KH_61752151.00E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03679RRP4, EXOSC2 RNA degradation map03018

Gene Ontology

GO term OntologyName
GO:0003723molecular_functionRNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.739
SRR3591706second leaf17.905
SRR3591707mature leaf17.353
SRR3591708Shoot apex26.623
SRR3591709Stem22.977
SRR3591710White floral bud41.070
SRR3591711White flower39.469
SRR3591712Green floral bud41.366
SRR3591713Yellow flower36.978
SRP173429 SRR8316895Juvenile bud stage 34.900
SRR8316896Juvenile bud stage 52.274
SRR8316897Juvenile bud stage 19.584
SRR8316894Third green stage 21.607
SRR8316900Third green stage 51.260
SRR8316901Third green stage 59.293
SRR8316898Complete white stage 31.664
SRR8316899Complete white stage 96.885
SRR8316903Complete white stage 54.464
SRR8316902Silver flowering stage20.886
SRR8316904Silver flowering stage26.115
SRR8316905Silver flowering stage14.220
SRR8316906Gold flowering stage 35.929
SRR8316907Gold flowering stage 35.173
SRR8316908Gold flowering stage 33.548
SRP132670SRR6706286Control69.048
SRR6706287Light intensity 50%72.787
SRR6706288Light intensity 20%78.460
CNP0000432CNS0095592Slightly white alabastrum(diploid) 152.291
CNS0095593Slightly white alabastrum(diploid) 254.750
CNS0095594Slightly white alabastrum(diploid) 339.765
CNS0095595Whole white alabastrum(diploid) 243.255
CNS0095596Whole white alabastrum(diploid) 340.342
CNS0095597Whole white alabastrum(diploid) 442.006
CNS0095598Silvery flower (diploied) 165.615
CNS0095599Silvery flower (diploied) 238.462
CNS0095600Silvery flower (diploied) 337.895
CNS0095601Golden flower (diploid) 145.720
CNS0095602Golden flower (diploid) 231.274
CNS0095603Golden flower (diploid) 334.558
CNS0095604Slightly white alabastrum(tetraploid) 138.272
CNS0095605Slightly white alabastrum(tetraploid) 232.864
CNS0095606Slightly white alabastrum(tetraploid) 346.364
CNS0095607Whole white alabastrum(tetraploid) 132.017
CNS0095608Whole white alabastrum(tetraploid) 226.084
CNS0095609Whole white alabastrum(tetraploid) 336.661
CNS0095610Silvery flower (tetraploid) 136.627
CNS0095611Silvery flower (tetraploid) 233.852
CNS0095612Silvery flower (tetraploid) 326.895
CNS0095613Golden flower (tetraploid) 125.514
CNS0095614Golden flower (tetraploid) 233.498
CNS0095615Golden flower (tetraploid) 324.514
CRA001975CRR073297Stem 163.606
CRR073298Stem 252.484
CRR073299Stem 331.523
CRR073300Leaf 178.461
CRR073301Leaf 279.074
CRR073302Leaf 330.668
CRR073303Juvenile bud 144.873
CRR073304Juvenile bud 229.102
CRR073305Juvenile bud 332.850
CRR073306Third green 119.033
CRR073307Third green 217.047
CRR073308Third green 317.765
CRR073309Second white 111.832
CRR073310Second white 214.114
CRR073311Second white 311.646
CRR073312Silver flowering 15.868
CRR073313Silver flowering 27.194
CRR073314Silver flowering 37.961
CRR073315Gold flowering 114.926
CRR073316Gold flowering 218.884
CRR073317Gold flowering 313.081
CRR073318Tawny withering 129.620
CRR073319Tawny withering 229.545
CRR073320Tawny withering 335.540