Gene detail

Detail information of GWHGAAZE033200

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010255777.1	4.7628E-175	PREDICTED: probable prolyl 4-hydroxylase 6 [Nelumbo nucifera]
COG	YP_001791681.1	4E-42	procollagen-proline dioxygenase
Swissprot	tr\|Q8L970\|P4H7_ARATH	5E-154	Probable prolyl 4-hydroxylase 7 (Precursor)
trEMBL	tr\|M5WT63\|M5WT63_PRUPE	1E-171	Uncharacterized protein {ECO:0000313\|EMBL:EMJ16894.1}
TAIR10	AT3G28480.1	5E-119	Oxoglutarate/iron-dependent oxygenase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	2838084	2841784	+
GWHAAZE00000094	mRNA	2838084	2841784	+
GWHAAZE00000094	exon	2838084	2838237	+
GWHAAZE00000094	exon	2838348	2838407	+
GWHAAZE00000094	exon	2838517	2838574	+
GWHAAZE00000094	exon	2839089	2839193	+
GWHAAZE00000094	exon	2839324	2839357	+
GWHAAZE00000094	exon	2839487	2839527	+
GWHAAZE00000094	exon	2840513	2840570	+
GWHAAZE00000094	exon	2840668	2840843	+
GWHAAZE00000094	exon	2840928	2840988	+
GWHAAZE00000094	exon	2841474	2841784	+
GWHAAZE00000094	five_prime_UTR	2838084	2838130	+
GWHAAZE00000094	CDS	2838131	2838237	+
GWHAAZE00000094	CDS	2838348	2838407	+
GWHAAZE00000094	CDS	2838517	2838574	+
GWHAAZE00000094	CDS	2839089	2839193	+
GWHAAZE00000094	CDS	2839324	2839357	+
GWHAAZE00000094	CDS	2839487	2839527	+
GWHAAZE00000094	CDS	2840513	2840570	+
GWHAAZE00000094	CDS	2840668	2840843	+
GWHAAZE00000094	CDS	2840928	2840988	+
GWHAAZE00000094	CDS	2841474	2841784	+

Transcript Sequence
>GWHTAAZE033239 GATCATTTCTTTCAACTGAAAAAATCTCAACACACACATTGTCTCTCATGGATTATCGAGTTTTTCTCTCCCTTTCTCTTGGGTTCCTCTTCTTTTTCCCTCATCTAACCCATTCCTCTCTCAATCTCTCTGGATGGCCTAAAGACAAGAAAAAACAAGGGTCGGTGCTTACTTTTGATCCTACTCGGGTCACCCAATTATCTTGGCGTCCAAGGGCTTTCATATACAGGAACTTTTTAACAGATGAGGAGTGTGATCATCTCATTCAGCTGGCTAGGGATAAGTTGGAGAAGTCTATGGTTGCTGACAATGACTCGGGTGAGAGCGTAGAGAGTGAAGTGCGGACGAGCTCTGGCATGTTTCTGAGGAAAGCCCAGATGTTTGCTATTGAATATGTCAGTGCAGTGATAGATTTGCAATTGTTGTCAATGATTTATGTTTTGCCTAATGGGGATGAAGTGGTTGCTCGCATTGAGGGAAGGATTGCTGCTTGGACATTTCTCCCCATAGAAAATGGCGAGTCAATTCAAATATTGCATTACGAGCATGGTCAAAAGTACGAGCCGCATTTTGATTATTTTCATGACAAAGCCAATCAAGAATTGGGCGGTCACCGCATTGCAACTGTACTTATGTATTTGTCTAATGTGGAGAAGGGTGGAGAAACTGTCTTTCCCAGTTCAGAGGCAAAAGACTCTCAACCAAAGGAGGATGACTGGTCTGACTGTGCTAAAAATGGATATTCAGTGAAACCCATGAAGGGGGACGCATTGCTGTTTTTCAGCCTTCATCCTGATGCAAGTACGGACCCATTGAGCTTGCATGGGAGCTGTCCGGTTATCGAGGGGGAGAAGTGGTCCGCAACCAAGTGGATTCATGTTAGGTCTTTCGATAAACTAGTGAAGAAAAGTGGAGAGTGTGTGGATGAGAATGCCAACTGCCCTATGTGGGCCGCTGCTGGTGAATGCAAAAAGAATCCTATTTATATGGTCGGCTCTGTGGACGCGGTTGGCTATTGTAGAAAGAGTTGCAACGCGTGTTCTTTACAGAAATCTTAG

Network for GWHGAAZE033200

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13640.7	2OG-FeII_Oxy_3	161	277	2.60E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00472	P4HA	Metabolic pathways	map01100
K00472	P4HA	Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418	molecular_function	L-ascorbic acid binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.873
	SRR3591706	second leaf	4.200
	SRR3591707	mature leaf	4.776
	SRR3591708	Shoot apex	9.954
	SRR3591709	Stem	36.934
	SRR3591710	White floral bud	54.544
	SRR3591711	White flower	69.985
	SRR3591712	Green floral bud	16.804
	SRR3591713	Yellow flower	23.254
SRP173429	SRR8316895	Juvenile bud stage	15.519
	SRR8316896	Juvenile bud stage	26.605
	SRR8316897	Juvenile bud stage	28.368
	SRR8316894	Third green stage	7.351
	SRR8316900	Third green stage	22.033
	SRR8316901	Third green stage	21.594
	SRR8316898	Complete white stage	21.107
	SRR8316899	Complete white stage	41.197
	SRR8316903	Complete white stage	31.314
	SRR8316902	Silver flowering stage	26.995
	SRR8316904	Silver flowering stage	33.370
	SRR8316905	Silver flowering stage	21.482
	SRR8316906	Gold flowering stage	42.442
	SRR8316907	Gold flowering stage	39.948
	SRR8316908	Gold flowering stage	54.890
SRP132670	SRR6706286	Control	13.407
	SRR6706287	Light intensity 50%	14.090
	SRR6706288	Light intensity 20%	15.908
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.417
	CNS0095593	Slightly white alabastrum(diploid) 2	27.233
	CNS0095594	Slightly white alabastrum(diploid) 3	25.498
	CNS0095595	Whole white alabastrum(diploid) 2	19.563
	CNS0095596	Whole white alabastrum(diploid) 3	11.498
	CNS0095597	Whole white alabastrum(diploid) 4	17.490
	CNS0095598	Silvery flower (diploied) 1	45.758
	CNS0095599	Silvery flower (diploied) 2	39.128
	CNS0095600	Silvery flower (diploied) 3	49.486
	CNS0095601	Golden flower (diploid) 1	34.975
	CNS0095602	Golden flower (diploid) 2	32.229
	CNS0095603	Golden flower (diploid) 3	34.146
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.147
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.275
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.135
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.386
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.515
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.486
	CNS0095610	Silvery flower (tetraploid) 1	42.447
	CNS0095611	Silvery flower (tetraploid) 2	42.257
	CNS0095612	Silvery flower (tetraploid) 3	86.493
	CNS0095613	Golden flower (tetraploid) 1	21.269
	CNS0095614	Golden flower (tetraploid) 2	25.759
	CNS0095615	Golden flower (tetraploid) 3	16.433
CRA001975	CRR073297	Stem 1	18.492
	CRR073298	Stem 2	13.533
	CRR073299	Stem 3	17.743
	CRR073300	Leaf 1	22.378
	CRR073301	Leaf 2	22.700
	CRR073302	Leaf 3	22.192
	CRR073303	Juvenile bud 1	22.741
	CRR073304	Juvenile bud 2	17.437
	CRR073305	Juvenile bud 3	19.011
	CRR073306	Third green 1	55.810
	CRR073307	Third green 2	61.439
	CRR073308	Third green 3	59.195
	CRR073309	Second white 1	58.997
	CRR073310	Second white 2	49.045
	CRR073311	Second white 3	33.577
	CRR073312	Silver flowering 1	26.286
	CRR073313	Silver flowering 2	26.662
	CRR073314	Silver flowering 3	29.925
	CRR073315	Gold flowering 1	8.583
	CRR073316	Gold flowering 2	11.537
	CRR073317	Gold flowering 3	8.900
	CRR073318	Tawny withering 1	65.022
	CRR073319	Tawny withering 2	70.674
	CRR073320	Tawny withering 3	95.855