Detail information of GWHGAAZE033205


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002281744.11.99999E-85PREDICTED: uncharacterized protein LOC100261085 [Vitis vinifera]
trEMBLtr|F6HV64|F6HV64_VITVI7E-86Putative uncharacterized protein {ECO:0000313|EMBL:CCB58582.1}
TAIR10AT5G62910.12E-31RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene28805742882139+
GWHAAZE00000094mRNA28805742882139+
GWHAAZE00000094exon28805742880645+
GWHAAZE00000094exon28807562880822+
GWHAAZE00000094exon28813432882139+
GWHAAZE00000094CDS28805742880645+
GWHAAZE00000094CDS28807562880822+
GWHAAZE00000094CDS28813432882139+
Transcript Sequence

Network for GWHGAAZE033205

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14570.7zf-RING_42462921.10E-18
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.767
SRR3591706second leaf18.064
SRR3591707mature leaf12.817
SRR3591708Shoot apex13.794
SRR3591709Stem7.979
SRR3591710White floral bud7.721
SRR3591711White flower7.717
SRR3591712Green floral bud10.085
SRR3591713Yellow flower2.045
SRP173429 SRR8316895Juvenile bud stage 12.213
SRR8316896Juvenile bud stage 18.814
SRR8316897Juvenile bud stage 13.529
SRR8316894Third green stage 5.661
SRR8316900Third green stage 16.798
SRR8316901Third green stage 18.312
SRR8316898Complete white stage 3.607
SRR8316899Complete white stage 14.393
SRR8316903Complete white stage 3.417
SRR8316902Silver flowering stage3.785
SRR8316904Silver flowering stage3.533
SRR8316905Silver flowering stage2.349
SRR8316906Gold flowering stage 4.842
SRR8316907Gold flowering stage 4.703
SRR8316908Gold flowering stage 9.308
SRP132670SRR6706286Control9.578
SRR6706287Light intensity 50%9.900
SRR6706288Light intensity 20%9.289
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.655
CNS0095593Slightly white alabastrum(diploid) 210.976
CNS0095594Slightly white alabastrum(diploid) 314.704
CNS0095595Whole white alabastrum(diploid) 211.204
CNS0095596Whole white alabastrum(diploid) 37.958
CNS0095597Whole white alabastrum(diploid) 411.379
CNS0095598Silvery flower (diploied) 115.156
CNS0095599Silvery flower (diploied) 213.826
CNS0095600Silvery flower (diploied) 38.059
CNS0095601Golden flower (diploid) 111.745
CNS0095602Golden flower (diploid) 211.703
CNS0095603Golden flower (diploid) 311.088
CNS0095604Slightly white alabastrum(tetraploid) 110.930
CNS0095605Slightly white alabastrum(tetraploid) 26.651
CNS0095606Slightly white alabastrum(tetraploid) 312.561
CNS0095607Whole white alabastrum(tetraploid) 17.886
CNS0095608Whole white alabastrum(tetraploid) 211.020
CNS0095609Whole white alabastrum(tetraploid) 313.798
CNS0095610Silvery flower (tetraploid) 119.850
CNS0095611Silvery flower (tetraploid) 218.422
CNS0095612Silvery flower (tetraploid) 36.374
CNS0095613Golden flower (tetraploid) 110.684
CNS0095614Golden flower (tetraploid) 215.596
CNS0095615Golden flower (tetraploid) 36.167
CRA001975CRR073297Stem 111.985
CRR073298Stem 29.985
CRR073299Stem 314.776
CRR073300Leaf 115.053
CRR073301Leaf 217.091
CRR073302Leaf 312.895
CRR073303Juvenile bud 113.651
CRR073304Juvenile bud 212.918
CRR073305Juvenile bud 316.836
CRR073306Third green 117.867
CRR073307Third green 215.087
CRR073308Third green 310.065
CRR073309Second white 116.907
CRR073310Second white 218.601
CRR073311Second white 39.758
CRR073312Silver flowering 112.883
CRR073313Silver flowering 211.624
CRR073314Silver flowering 312.252
CRR073315Gold flowering 114.636
CRR073316Gold flowering 213.661
CRR073317Gold flowering 38.960
CRR073318Tawny withering 15.052
CRR073319Tawny withering 28.598
CRR073320Tawny withering 36.802