Gene detail

Detail information of GWHGAAZE033209

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007014936.1	3.3796E-144	Matrixin family protein, putative [Theobroma cacao]
COG	YP_006179981.1	2E-40	M10 family peptidase
Swissprot	tr\|P29136\|MEP1_SOYBN	6E-75	Metalloendoproteinase 1 (Precursor)
trEMBL	tr\|A0A061GRS4\|A0A061GRS4_THECC	1E-144	Matrixin family protein, putative {ECO:0000313\|EMBL:EOY32555.1}
TAIR10	AT1G59970.1	8E-52	Matrixin family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	2946615	2947559	-
GWHAAZE00000094	mRNA	2946615	2947559	-
GWHAAZE00000094	exon	2946615	2947559	-
GWHAAZE00000094	CDS	2946615	2947559	-

Transcript Sequence
>GWHTAAZE033248 ATGGCAATTAAAGTTTCCCATCTCTTTTTATGCATCTTCCTCCTTCTCCCTCTCCTGTCTAATTCAAAGTTAGAGGAGAACAATGGTGAAAAGCCATCATCGCCCTTTGAGTTTCTCAAGCATTTGCAAGGGTGTCACAAGGGAGAAAAGCTAAAAGGTGTCCATAACCTTAAACAATACCTCAAGAATTTTGGTTACCTAAACTATCCCAAAAATTACTCCCATTGCGACGATGACGATTTTGATGATTTCTTAGAGGAAGCCGTCAAAACCTACCAACTCAATTATCATCTTAATGCCACGGGTACCTTAGATGCTCAAACAGTATCAAAGATGATTACACCTCGATGCGGTGTGGCTGATATTATCAATGGTACAAATGGGATGCGCGCGGGCAAGAAAAAGCACCATCATGGCTCTCATTCACTTCATACAGTTTCTCACTATACTTTCTTTCAAGGATTTCCAAGATGGCCAGCTTCTAAGACCCACCTTACCTTTGGGTTTTCACGCGGGACCCATCCTAATGTGGTCAACCCTGTTACACGAGCTTTTAAAAGTTGGGCTGGTACAACACATTTTACATTTTCGCAGACCGAAGATTATTTGAATGCCGATATAAAGATTAGTTTCCATAGTGGTAGCCACGGAGATGGTCAGCCATTTGATGGTCGTGGTGGAACACTGGCTCATGCTTGGGCACCAACCGATGGAAGGTTTCACTATGATGCCGATGAATTGTGGTCTATTGGTCCAGTCTCCGGAGCTTATGATTTAGAGACTGTTGCGTTGCATGAAATTGGGCACCTTCTTGGACTTGGGCATAGCTCGGTTGAGGATGCAATCATGTATCCATCCATTATGGCGGGAACGACTAAAGGTCTACACGGGGATGACGTTCAGGGAATTAGGGTTTTGTATAACGTTTGTCGTATAAATTTTTAG

Network for GWHGAAZE033209

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0165

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01471.19	PG_binding_1	53	112	6.60E-13
PF00413.25	Peptidase_M10	164	307	4.00E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0031012	cellular_component	extracellular matrix
GO:0004222	molecular_function	metalloendopeptidase activity
GO:0008270	molecular_function	zinc ion binding
GO:0008237	molecular_function	metallopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.411
	SRR3591707	mature leaf	2.709
	SRR3591708	Shoot apex	0.089
	SRR3591709	Stem	0.235
	SRR3591710	White floral bud	3.094
	SRR3591711	White flower	0.504
	SRR3591712	Green floral bud	2.069
	SRR3591713	Yellow flower	0.460
SRP173429	SRR8316895	Juvenile bud stage	0.341
	SRR8316896	Juvenile bud stage	0.987
	SRR8316897	Juvenile bud stage	0.840
	SRR8316894	Third green stage	0.419
	SRR8316900	Third green stage	0.973
	SRR8316901	Third green stage	1.416
	SRR8316898	Complete white stage	2.147
	SRR8316899	Complete white stage	3.632
	SRR8316903	Complete white stage	1.537
	SRR8316902	Silver flowering stage	0.917
	SRR8316904	Silver flowering stage	0.991
	SRR8316905	Silver flowering stage	1.044
	SRR8316906	Gold flowering stage	4.517
	SRR8316907	Gold flowering stage	1.337
	SRR8316908	Gold flowering stage	3.950
SRP132670	SRR6706286	Control	4.945
	SRR6706287	Light intensity 50%	4.084
	SRR6706288	Light intensity 20%	2.597
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.109
	CNS0095593	Slightly white alabastrum(diploid) 2	0.118
	CNS0095594	Slightly white alabastrum(diploid) 3	0.399
	CNS0095595	Whole white alabastrum(diploid) 2	0.033
	CNS0095596	Whole white alabastrum(diploid) 3	0.044
	CNS0095597	Whole white alabastrum(diploid) 4	0.043
	CNS0095598	Silvery flower (diploied) 1	0.136
	CNS0095599	Silvery flower (diploied) 2	0.079
	CNS0095600	Silvery flower (diploied) 3	2.086
	CNS0095601	Golden flower (diploid) 1	0.342
	CNS0095602	Golden flower (diploid) 2	0.436
	CNS0095603	Golden flower (diploid) 3	0.463
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.065
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.141
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.180
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.128
	CNS0095610	Silvery flower (tetraploid) 1	0.543
	CNS0095611	Silvery flower (tetraploid) 2	0.132
	CNS0095612	Silvery flower (tetraploid) 3	0.468
	CNS0095613	Golden flower (tetraploid) 1	1.503
	CNS0095614	Golden flower (tetraploid) 2	4.867
	CNS0095615	Golden flower (tetraploid) 3	0.108
CRA001975	CRR073297	Stem 1	0.078
	CRR073298	Stem 2	0.226
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.065
	CRR073301	Leaf 2	0.234
	CRR073302	Leaf 3	0.035
	CRR073303	Juvenile bud 1	0.092
	CRR073304	Juvenile bud 2	0.033
	CRR073305	Juvenile bud 3	0.154
	CRR073306	Third green 1	0.340
	CRR073307	Third green 2	0.036
	CRR073308	Third green 3	0.067
	CRR073309	Second white 1	0.792
	CRR073310	Second white 2	0.451
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.333
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.448
	CRR073316	Gold flowering 2	0.018
	CRR073317	Gold flowering 3	1.176
	CRR073318	Tawny withering 1	4.870
	CRR073319	Tawny withering 2	6.891
	CRR073320	Tawny withering 3	0.767