Gene detail

Detail information of GWHGAAZE033210

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010037506.1	3.372E-133	PREDICTED: metalloendoproteinase 1-like [Eucalyptus grandis]
COG	YP_006179981.1	2E-43	M10 family peptidase
Swissprot	tr\|P29136\|MEP1_SOYBN	4E-76	Metalloendoproteinase 1 (Precursor)
trEMBL	tr\|A0A059A513\|A0A059A513_EUCGR	1E-133	Uncharacterized protein {ECO:0000313\|EMBL:KCW49212.1}
TAIR10	AT1G59970.1	5E-52	Matrixin family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	2974927	2978038	-
GWHAAZE00000094	mRNA	2974927	2978038	-
GWHAAZE00000094	exon	2978006	2978038	-
GWHAAZE00000094	exon	2974927	2975790	-
GWHAAZE00000094	CDS	2978006	2978038	-
GWHAAZE00000094	CDS	2974927	2975790	-

Transcript Sequence
>GWHTAAZE033249 ATGTATCCATCCATTATGGCGGAACGACTAAAGTTAGAGGAGCACAATGGTGAAAAGCCATCATCTCCCTTTGAGTTTCTCAAGCATTTACAAGGGTGCCATAAGGGAGAAAAGGTAAAAGGTGTTCACAACCTTAAACAATACCTCAAGAATTTTGGTTACTTAAACTGTCCAAAAAATTACTCCCATTGCGACGACGACGATTTTGACGGTTTCTTAGATGAAGCCGTCAAAACCTACCAACTCAATTATCATCTTAACACCACTGGTACCTTAGATGCTCAAACTGTATCAATGATGATGAAACCTCGATGCGGTGTGGCTGATATTATCAATGGTACTAATAGGATGCGTGCCGGCAAGAAAAAGCACCACCATGGCTCTCATTCACTTCATACAGTTTCTCACTATACTTTCTTTCAAGGATTTCCGAGATGGCCAGCTTCTAAGACCCACCTTACCTTTGCGTTTTCACGAGGGACCGGCGATCCTGATGCAGTCAACCCTATTACGCGAGCTTTTACCAGATGGGCTCGTACAACACATTTTACATTTTCGCGGACTGAAGATTATTTGAATGCCGATATAAAGATTAGTTTCCATAGAGGTAACCATGGAGATGGTCACCCATTTTACGGTCGTGGTGGAGCCCTGGCTCATGCTTTTGCACCGACCGATGGAAGGTTTCACTATGATGCCGATGAATTGTGGTCTGAGGGTCCAGTCTCCGGAGCTTTTGATTTAGAGACTGTTGCCTTGCATGAAATTGGGCACCTTCTTGGACTTGGGCATAGCTCGGTTGAGGACGCAATCATGTATTCTTATATTTCACCAGGAACAACTAAAGGTCTACATGGGGACGATGTTCAAGGAATTAGGGCTTTATATAATGTTTGA

Network for GWHGAAZE033210

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0164

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01471.19	PG_binding_1	41	100	1.60E-11
PF00413.25	Peptidase_M10	149	296	4.50E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0031012	cellular_component	extracellular matrix
GO:0008237	molecular_function	metallopeptidase activity
GO:0008270	molecular_function	zinc ion binding
GO:0004222	molecular_function	metalloendopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.054
	SRR3591707	mature leaf	0.754
	SRR3591708	Shoot apex	0.432
	SRR3591709	Stem	0.589
	SRR3591710	White floral bud	1.885
	SRR3591711	White flower	1.606
	SRR3591712	Green floral bud	2.379
	SRR3591713	Yellow flower	1.997
SRP173429	SRR8316895	Juvenile bud stage	0.276
	SRR8316896	Juvenile bud stage	0.202
	SRR8316897	Juvenile bud stage	0.254
	SRR8316894	Third green stage	0.121
	SRR8316900	Third green stage	0.683
	SRR8316901	Third green stage	0.304
	SRR8316898	Complete white stage	0.355
	SRR8316899	Complete white stage	0.686
	SRR8316903	Complete white stage	0.669
	SRR8316902	Silver flowering stage	1.395
	SRR8316904	Silver flowering stage	1.400
	SRR8316905	Silver flowering stage	0.699
	SRR8316906	Gold flowering stage	4.754
	SRR8316907	Gold flowering stage	1.434
	SRR8316908	Gold flowering stage	1.092
SRP132670	SRR6706286	Control	4.606
	SRR6706287	Light intensity 50%	3.009
	SRR6706288	Light intensity 20%	1.852
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.366
	CNS0095593	Slightly white alabastrum(diploid) 2	0.582
	CNS0095594	Slightly white alabastrum(diploid) 3	0.307
	CNS0095595	Whole white alabastrum(diploid) 2	0.113
	CNS0095596	Whole white alabastrum(diploid) 3	0.203
	CNS0095597	Whole white alabastrum(diploid) 4	0.256
	CNS0095598	Silvery flower (diploied) 1	0.430
	CNS0095599	Silvery flower (diploied) 2	0.631
	CNS0095600	Silvery flower (diploied) 3	1.926
	CNS0095601	Golden flower (diploid) 1	0.727
	CNS0095602	Golden flower (diploid) 2	1.329
	CNS0095603	Golden flower (diploid) 3	1.470
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.535
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.117
	CNS0095614	Golden flower (tetraploid) 2	0.443
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.219
	CRR073298	Stem 2	1.702
	CRR073299	Stem 3	1.158
	CRR073300	Leaf 1	0.574
	CRR073301	Leaf 2	1.820
	CRR073302	Leaf 3	0.773
	CRR073303	Juvenile bud 1	0.142
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.345
	CRR073306	Third green 1	0.794
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.339
	CRR073309	Second white 1	0.337
	CRR073310	Second white 2	0.897
	CRR073311	Second white 3	0.298
	CRR073312	Silver flowering 1	0.136
	CRR073313	Silver flowering 2	0.923
	CRR073314	Silver flowering 3	0.630
	CRR073315	Gold flowering 1	0.068
	CRR073316	Gold flowering 2	0.371
	CRR073317	Gold flowering 3	1.132
	CRR073318	Tawny withering 1	3.632
	CRR073319	Tawny withering 2	5.897
	CRR073320	Tawny withering 3	0.396