Gene detail

Detail information of GWHGAAZE033212

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010037506.1	4.429E-133	PREDICTED: metalloendoproteinase 1-like [Eucalyptus grandis]
COG	YP_006179981.1	4E-41	M10 family peptidase
Swissprot	tr\|P29136\|MEP1_SOYBN	1E-73	Metalloendoproteinase 1 (Precursor)
trEMBL	tr\|A0A059A513\|A0A059A513_EUCGR	2E-133	Uncharacterized protein {ECO:0000313\|EMBL:KCW49212.1}
TAIR10	AT1G59970.1	2E-49	Matrixin family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	3006981	3007910	-
GWHAAZE00000094	mRNA	3006981	3007910	-
GWHAAZE00000094	exon	3006981	3007910	-
GWHAAZE00000094	CDS	3006981	3007910	-

Transcript Sequence
>GWHTAAZE033251 ATGGCAATTAAAGTTTCCCAACTCTTTTTTTGCATCTTCCTCCTTCTCCCTCTCCTATCTAATTCAAAGTTAGAGGAGCACAATGGTGAAAAGCCATCATCTCCCTTTGAGTTTCTCAAGCATTTACAAGGGTGCCATAAGGGAGAAAAGGTAAAAGGTGTTCACAACCTTAAACAATACCTCAAGAATTTTGGTTACTTAAACTGTCCAAAAAATTACTCCCATTGCGACGACGACGATTTTGACGGTTTCTTAGATGAAGCCGTCAAAACCTACCAACTCAATTATCATCTTAACACCACTGGTACCTTAGATGCTCAAACTGTATCAATGATGATGAAACCTCGATGCGGTGTGGCTGATATTATCAATGGTACTAATAGGATGCGTGCCGGCAAGAAAAAGCACCACCATGGCTCTCATTCACTTCATACAGTTTCTCACTATACTTTCTTTCAAGGATTTCCGAGATGGCCAGCTTCTAAGACCCACCTTACCTTTGCGTTTTCACGAGGGACCGGCGATCCTGATGCAGTCAACCCTATTACGCGAGCTTTTACCAGATGGGCTCGTACAACACATTTTACATTTTCGGATCAAGATTATTTGAATGCCGATATAAAGATTAGTTTCCATAGAGGTAACCATGGAGATGGTCACCCATTTTACGGTCGTGGTGGAGCCCTGGCTCATGCTTTTGCACCGACCGATGGAAGGTTTCACTATGATGCCGATGAATTGTGGTCTGAGGGTCCAGTCTCCGGAGCTTTTGATTTAGAGACTGTTGCCTTGCATGAAATTGGGCACCTTCTTGGACTTGGGCATAGCTCGGTTGAGGACGCAATCATGTATTCTTATATTTCACCAGGAACAACTAAAGGTCTACATGGGGACGATGTTCAAGGAATTAGGGCTTTATATAATGTTTGA

Network for GWHGAAZE033212

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0164

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01471.19	PG_binding_1	53	112	1.70E-11
PF00413.25	Peptidase_M10	161	307	4.20E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0031012	cellular_component	extracellular matrix
GO:0008237	molecular_function	metallopeptidase activity
GO:0008270	molecular_function	zinc ion binding
GO:0004222	molecular_function	metalloendopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.053
	SRR3591707	mature leaf	0.620
	SRR3591708	Shoot apex	0.265
	SRR3591709	Stem	0.098
	SRR3591710	White floral bud	1.666
	SRR3591711	White flower	1.474
	SRR3591712	Green floral bud	1.285
	SRR3591713	Yellow flower	1.560
SRP173429	SRR8316895	Juvenile bud stage	0.114
	SRR8316896	Juvenile bud stage	0.258
	SRR8316897	Juvenile bud stage	0.052
	SRR8316894	Third green stage	0.119
	SRR8316900	Third green stage	0.322
	SRR8316901	Third green stage	0.207
	SRR8316898	Complete white stage	0.366
	SRR8316899	Complete white stage	0.513
	SRR8316903	Complete white stage	0.286
	SRR8316902	Silver flowering stage	0.587
	SRR8316904	Silver flowering stage	0.750
	SRR8316905	Silver flowering stage	0.326
	SRR8316906	Gold flowering stage	3.420
	SRR8316907	Gold flowering stage	1.152
	SRR8316908	Gold flowering stage	0.566
SRP132670	SRR6706286	Control	2.607
	SRR6706287	Light intensity 50%	1.619
	SRR6706288	Light intensity 20%	1.144
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.134
	CNS0095593	Slightly white alabastrum(diploid) 2	0.241
	CNS0095594	Slightly white alabastrum(diploid) 3	0.412
	CNS0095595	Whole white alabastrum(diploid) 2	0.110
	CNS0095596	Whole white alabastrum(diploid) 3	0.135
	CNS0095597	Whole white alabastrum(diploid) 4	0.053
	CNS0095598	Silvery flower (diploied) 1	0.237
	CNS0095599	Silvery flower (diploied) 2	0.482
	CNS0095600	Silvery flower (diploied) 3	1.759
	CNS0095601	Golden flower (diploid) 1	0.572
	CNS0095602	Golden flower (diploid) 2	0.809
	CNS0095603	Golden flower (diploid) 3	1.270
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.094
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.001
	CNS0095613	Golden flower (tetraploid) 1	0.021
	CNS0095614	Golden flower (tetraploid) 2	0.123
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.365
	CRR073298	Stem 2	0.866
	CRR073299	Stem 3	0.433
	CRR073300	Leaf 1	0.227
	CRR073301	Leaf 2	0.746
	CRR073302	Leaf 3	0.554
	CRR073303	Juvenile bud 1	0.138
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.121
	CRR073306	Third green 1	0.282
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.290
	CRR073309	Second white 1	0.147
	CRR073310	Second white 2	0.539
	CRR073311	Second white 3	0.350
	CRR073312	Silver flowering 1	0.128
	CRR073313	Silver flowering 2	0.475
	CRR073314	Silver flowering 3	0.476
	CRR073315	Gold flowering 1	0.066
	CRR073316	Gold flowering 2	0.167
	CRR073317	Gold flowering 3	0.374
	CRR073318	Tawny withering 1	2.010
	CRR073319	Tawny withering 2	2.166
	CRR073320	Tawny withering 3	0.109