Gene detail

Detail information of GWHGAAZE033238

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002274893.1	0	PREDICTED: putative cyclic nucleotide-gated ion channel 18 [Vitis vinifera]
COG	YP_724331.1	1E-21	cyclic nucleotide-binding protein
Swissprot	tr\|Q9LEQ3\|CNG18_ARATH	0	Putative cyclic nucleotide-gated ion channel 18
trEMBL	tr\|A5B4V4\|A5B4V4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN80791.1}
TAIR10	AT5G14870.1	0	cyclic nucleotide-gated channel 18

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	3373534	3376801	+
GWHAAZE00000094	mRNA	3373534	3376801	+
GWHAAZE00000094	exon	3373534	3373566	+
GWHAAZE00000094	exon	3374736	3375043	+
GWHAAZE00000094	exon	3375125	3375236	+
GWHAAZE00000094	exon	3375693	3375929	+
GWHAAZE00000094	exon	3376016	3376801	+
GWHAAZE00000094	CDS	3373534	3373566	+
GWHAAZE00000094	CDS	3374736	3375043	+
GWHAAZE00000094	CDS	3375125	3375236	+
GWHAAZE00000094	CDS	3375693	3375929	+
GWHAAZE00000094	CDS	3376016	3376801	+

Transcript Sequence
>GWHTAAZE033277 ATGGGGAATTCTAGAGGTAATTCGGGTTCAACAGTAGCAGGAGCTTCATGGTATCTATTGTCTATAGGACGGCAACACTCCTGCTGGAGAATTGAGTGTAAAAGGGAGCGTAATTCCATTCCGCCATGCTATCCTTCTTTTCTGGATTGTAAAAGTACAAACCAACTTGAACGCAGATATTGGTTGAATGCAACGCATGTGCTTTCCTACTGTGATGCTAATAATGTAAAAAGTGACTTCAAATTTGGAATGTTTGCGGATGCTTTTACTAGTAAAGTTGCTTCCTCTGGTCTCAGGGATAGGGCTTTGTATTGCCTTTGGTGGGGTTTGAGAAGTTTAAGTTCCTATGGACAGAATTTGGAGACTAGCACTTTTCTTGGAGAGACGGCATTTTGCATTTCGCTGTGCATTATAGGCTTGATTCTATTCGCACAGTTAATAGGCAACATGCAGACATATTTGCAATCAATGACGATGAGACTTGAAGAGTGGAGGGTTAAGCGAAGAGATACTGAGGAGTGGATGAGGCACCGCCAATTACCTCCAGAATTGCAAGAGCGTGTTCGTCAGTTTGTTCAGTACAGATGGTTTGCCACGAGAGGAGTTAACGAAGAATCTATTCTCCAGTCTTTCCCAACTGACCTCCGTCGCGAAATTCAGAGACATCAGTGTCTTAACCTTGTCCGCCGTGTTCCTTTCTTTTCACAAATGAATGATCCACTTCTTGATGCCATATGTGAACGGCTCATCTCATCGTTGAGCACTCAAGGCACCTACATCGTGCGAGAGGAAGACCCTGTAAACGAGATGCTATTTATTATAAGGGGAAAACTCGAGAGCTCCACAACTAACGGAAGGAGGTCCGGATTCTTCAACTCTATAACCCTTGGGCCTGGTGACTTTTGCGGGGAGGAGTTGCTGACATGGGCCTTAGTGCCCACCCCGAATCTCAATCTTCCTTCGTCAACTCGAACTGTGAAAGCACTGACAGAAGTAGAAGCTTTCGCACTCAAAGCTGAAGACCTCAAATTTGTTTCGAGCCAATTCAAGAATCTTCACAGCAAGAAACTCCAACATGCATTTAGGCACTATTCTCACCAGTGGAGGACATGGGGCGCTTGTTTTATACAAGCTGCATGGAGAAGGTACAAGCGGAGGAAGCTGGCAATGGAATTGGCTATACAAGAGAGGAACTATTATATGCCATTAATCAATGACAGTGATGAAGTGGATGATGGAGATTATAATGATGACGATGGTGGTGATGAGAGTGGTGAGAGCTCATCATTAATTGATAATAAACAAAAGGTACAACACCTTGGAACCACAATTTTGGCACATAAATTTGCTGCAAATACAAAAAGGGGGATGCATCAGAAGGTTATGGTGGTGGAACCGGATCCTTCCACCCTAAAAATGCCGCGGTTGCTTAAGCCTGATGAGCCTGATTTCTCTGTAGTCAAAGAGCATGATTAG

Network for GWHGAAZE033238

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00520.32	Ion_trans	15	160	1.00E-07
PF00027.30	cNMP_binding	256	343	8.80E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05391	CNGC	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006811	biological_process	ion transport
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0005216	molecular_function	ion channel activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.159
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.366
	SRR3591709	Stem	0.564
	SRR3591710	White floral bud	110.536
	SRR3591711	White flower	5.954
	SRR3591712	Green floral bud	73.935
	SRR3591713	Yellow flower	4.003
SRP173429	SRR8316895	Juvenile bud stage	3.367
	SRR8316896	Juvenile bud stage	15.230
	SRR8316897	Juvenile bud stage	10.500
	SRR8316894	Third green stage	7.033
	SRR8316900	Third green stage	40.794
	SRR8316901	Third green stage	37.035
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.404
	SRR8316903	Complete white stage	0.268
	SRR8316902	Silver flowering stage	1.408
	SRR8316904	Silver flowering stage	2.113
	SRR8316905	Silver flowering stage	0.365
	SRR8316906	Gold flowering stage	0.393
	SRR8316907	Gold flowering stage	0.069
	SRR8316908	Gold flowering stage	0.167
SRP132670	SRR6706286	Control	15.036
	SRR6706287	Light intensity 50%	17.393
	SRR6706288	Light intensity 20%	15.495
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.192
	CNS0095593	Slightly white alabastrum(diploid) 2	22.836
	CNS0095594	Slightly white alabastrum(diploid) 3	38.265
	CNS0095595	Whole white alabastrum(diploid) 2	84.873
	CNS0095596	Whole white alabastrum(diploid) 3	95.106
	CNS0095597	Whole white alabastrum(diploid) 4	113.213
	CNS0095598	Silvery flower (diploied) 1	3.388
	CNS0095599	Silvery flower (diploied) 2	15.358
	CNS0095600	Silvery flower (diploied) 3	4.061
	CNS0095601	Golden flower (diploid) 1	3.739
	CNS0095602	Golden flower (diploid) 2	3.438
	CNS0095603	Golden flower (diploid) 3	3.348
	CNS0095604	Slightly white alabastrum(tetraploid) 1	56.681
	CNS0095605	Slightly white alabastrum(tetraploid) 2	60.090
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.036
	CNS0095607	Whole white alabastrum(tetraploid) 1	128.693
	CNS0095608	Whole white alabastrum(tetraploid) 2	173.533
	CNS0095609	Whole white alabastrum(tetraploid) 3	69.849
	CNS0095610	Silvery flower (tetraploid) 1	1.895
	CNS0095611	Silvery flower (tetraploid) 2	13.105
	CNS0095612	Silvery flower (tetraploid) 3	23.208
	CNS0095613	Golden flower (tetraploid) 1	2.602
	CNS0095614	Golden flower (tetraploid) 2	0.674
	CNS0095615	Golden flower (tetraploid) 3	14.071
CRA001975	CRR073297	Stem 1	8.874
	CRR073298	Stem 2	7.845
	CRR073299	Stem 3	4.445
	CRR073300	Leaf 1	44.617
	CRR073301	Leaf 2	26.558
	CRR073302	Leaf 3	10.755
	CRR073303	Juvenile bud 1	42.673
	CRR073304	Juvenile bud 2	23.116
	CRR073305	Juvenile bud 3	5.231
	CRR073306	Third green 1	21.062
	CRR073307	Third green 2	22.925
	CRR073308	Third green 3	20.062
	CRR073309	Second white 1	1.516
	CRR073310	Second white 2	2.984
	CRR073311	Second white 3	3.915
	CRR073312	Silver flowering 1	21.845
	CRR073313	Silver flowering 2	24.519
	CRR073314	Silver flowering 3	13.553
	CRR073315	Gold flowering 1	20.696
	CRR073316	Gold flowering 2	5.196
	CRR073317	Gold flowering 3	4.984
	CRR073318	Tawny withering 1	24.122
	CRR073319	Tawny withering 2	20.717
	CRR073320	Tawny withering 3	18.682