Gene detail

Detail information of GWHGAAZE033239

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010251301.1	PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Nelumbo nucifera]
COG	YP_722268.1	aldehyde dehydrogenase
Swissprot	tr\|Q9SU63\|AL2B4_ARATH	Aldehyde dehydrogenase family 2 member B4, mitochondrial (Precursor)
trEMBL	tr\|A0A067K2T2\|A0A067K2T2_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP26565.1}
TAIR10	AT3G48000.1	aldehyde dehydrogenase 2B4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	3424282	3429044	+
GWHAAZE00000094	mRNA	3424282	3429044	+
GWHAAZE00000094	exon	3424282	3424351	+
GWHAAZE00000094	exon	3425481	3425615	+
GWHAAZE00000094	exon	3425741	3425814	+
GWHAAZE00000094	exon	3426732	3426885	+
GWHAAZE00000094	exon	3426969	3427198	+
GWHAAZE00000094	exon	3427352	3427441	+
GWHAAZE00000094	exon	3427852	3428025	+
GWHAAZE00000094	exon	3428133	3428270	+
GWHAAZE00000094	exon	3428376	3428513	+
GWHAAZE00000094	exon	3428614	3428675	+
GWHAAZE00000094	exon	3428771	3429044	+
GWHAAZE00000094	CDS	3424282	3424351	+
GWHAAZE00000094	CDS	3425481	3425615	+
GWHAAZE00000094	CDS	3425741	3425814	+
GWHAAZE00000094	CDS	3426732	3426885	+
GWHAAZE00000094	CDS	3426969	3427198	+
GWHAAZE00000094	CDS	3427352	3427441	+
GWHAAZE00000094	CDS	3427852	3428025	+
GWHAAZE00000094	CDS	3428133	3428270	+
GWHAAZE00000094	CDS	3428376	3428513	+
GWHAAZE00000094	CDS	3428614	3428675	+
GWHAAZE00000094	CDS	3428771	3429044	+

Transcript Sequence
>GWHTAAZE033278 ATGGCGGCTCGGAGGATCTCGTTTCTGTTATCTCCTTCCTCTGTTCCTTCTATTGCTGCTCGATTTTTGGGCCGATACCCTGGTTGGGGCAGAAGCGTTCCAAGATTTAGCACTGCTGCTGCATTCGAAGAACCAATCACTCCACCTGTTCACGCAAATTATACAAAGCTTCTTATCAACGGCCAATTTATTGATGCTGCTTCAGGGAAAACTTTTCCTACCTTGGACCCTAGAACAGGGGAAGTGATTGCTAATATTGCTGAAGGTGACTCCGAAGATGAAAGATCATGTACAATGTTGAGGTTTGCTGATTTGATGGAGAAGCACACCGAGGAAATTGCAGCTCTCGAGACTTGGGATAACGGGAAGCCTTATGAACAGGCTGCAACTGCCGAAATACCAATGGTTATACGTCTTTTTAGATACTATGCTGGTTGGGCCGATAAGATCCATGGTCTGACAGTTCCTGCTGATGGGCCCTATCATGTCCAGACCCTGCATGAGCCAATTGGTGTTGCTGGCCAAATTATACCATGGAATTTTCCTCTTCTTATGTATGCTTGGAAGGTTGGCCCTGCATTGGCCTGTGGTAACACTGTTGTACTTAAAACAGCAGAACAGACACCACTGTCAGCCCTCTTTGTGTCGAAGCTATTCCTTGAGGCTGGACTTCCTCCCGGCGTTTTGAATGTCATTTCCGGGTTTGGTCCTACTGCTGGCGCAGCTCTTGCTAGTCATATGGATGTGGATAAGCTTGCTTTCACAGGTTCAACTGAAACCGGTAAGGTTGTACTTGGAATGGCTGCAAAGAGCAATCTTAAGCCAGTGACCTTAGAGCTTGGAGGAAAATCTCCTTTCATTGTGTGTGAGGATGCTAACATTGATAAAGCTGTCGAGCTTGCACACTCAGCTGTCTTCTTCAACCAGGGTCAGTGTTGCTGTGCTGGGTCCCGTACATTTGTGCATGAACGTATCTACGATGAGTTTATAGAGAAAGCAAAGGCACGCGCTTTAAGCCGAGTGGTTGGTGATCCTTTCAAGAAGGGTGTTGAACAAGGTCCTCAGATTGATTCTGAGCAATTCAGGAAGATTCTCAAGTACATACAGTCTGGTGTTGATGGTGGTGCTACCCTTGAATCGGGAGGTGAAAGATTCGGCTCTAAAGGCTACTACATTCAACCCACTGTTTTCTCTAATGTCCAGGACAATATGTTGATAGCAACGGATGAGATATTTGGTCCAGTTCAGTCCATCTTGAAATTCAAGGATCTTGATGAGGTCATCCGAAGGGCAAATGCAAGTCGATATGGGCTGGCTGCTGGAGTGTTTACACACAACATAGACACTGCCAACACTTTGACTCGTGCATTGAGAGCTGGGACAATATGGATTAATTGCTTTGATGTTTTTGATGCGGCAATTCCTTTTGGCGGGTACAAAATGAGCGGGCAGGGAAGAGAAAAAGGAATCTACAGCCTTAGTAACTACTTGCAAGTTAAAGCTGTTGTTACTCCTCTCAAGAGTCCAGCATGGATCTAA

Network for GWHGAAZE033239

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00171.23	Aldedh	93	502	1.90E-159

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00128	ALDH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010
		Ascorbate and aldarate metabolism	map00053
		Pyruvate metabolism	map00620
		Fatty acid degradation	map00071
		Glycerolipid metabolism	map00561
		Valine, leucine and isoleucine degradation	map00280
		Lysine degradation	map00310
		Arginine and proline metabolism	map00330
		Histidine metabolism	map00340
		Tryptophan metabolism	map00380
		beta-Alanine metabolism	map00410
		Insect hormone biosynthesis	map00981
		Limonene and pinene degradation	map00903
		Chloroalkane and chloroalkene degradation	map00625

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	138.376
	SRR3591706	second leaf	61.494
	SRR3591707	mature leaf	69.804
	SRR3591708	Shoot apex	81.612
	SRR3591709	Stem	213.939
	SRR3591710	White floral bud	66.323
	SRR3591711	White flower	84.631
	SRR3591712	Green floral bud	86.271
	SRR3591713	Yellow flower	161.227
SRP173429	SRR8316895	Juvenile bud stage	70.868
	SRR8316896	Juvenile bud stage	99.681
	SRR8316897	Juvenile bud stage	48.847
	SRR8316894	Third green stage	29.322
	SRR8316900	Third green stage	85.224
	SRR8316901	Third green stage	78.559
	SRR8316898	Complete white stage	50.155
	SRR8316899	Complete white stage	88.279
	SRR8316903	Complete white stage	72.549
	SRR8316902	Silver flowering stage	54.434
	SRR8316904	Silver flowering stage	76.297
	SRR8316905	Silver flowering stage	43.959
	SRR8316906	Gold flowering stage	187.646
	SRR8316907	Gold flowering stage	161.672
	SRR8316908	Gold flowering stage	360.627
SRP132670	SRR6706286	Control	118.190
	SRR6706287	Light intensity 50%	99.014
	SRR6706288	Light intensity 20%	103.718
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	59.255
	CNS0095593	Slightly white alabastrum(diploid) 2	57.777
	CNS0095594	Slightly white alabastrum(diploid) 3	73.168
	CNS0095595	Whole white alabastrum(diploid) 2	63.886
	CNS0095596	Whole white alabastrum(diploid) 3	61.071
	CNS0095597	Whole white alabastrum(diploid) 4	58.253
	CNS0095598	Silvery flower (diploied) 1	161.682
	CNS0095599	Silvery flower (diploied) 2	151.773
	CNS0095600	Silvery flower (diploied) 3	241.511
	CNS0095601	Golden flower (diploid) 1	169.175
	CNS0095602	Golden flower (diploid) 2	254.069
	CNS0095603	Golden flower (diploid) 3	247.643
	CNS0095604	Slightly white alabastrum(tetraploid) 1	70.320
	CNS0095605	Slightly white alabastrum(tetraploid) 2	77.447
	CNS0095606	Slightly white alabastrum(tetraploid) 3	68.427
	CNS0095607	Whole white alabastrum(tetraploid) 1	68.804
	CNS0095608	Whole white alabastrum(tetraploid) 2	57.756
	CNS0095609	Whole white alabastrum(tetraploid) 3	117.750
	CNS0095610	Silvery flower (tetraploid) 1	165.791
	CNS0095611	Silvery flower (tetraploid) 2	142.691
	CNS0095612	Silvery flower (tetraploid) 3	125.960
	CNS0095613	Golden flower (tetraploid) 1	90.756
	CNS0095614	Golden flower (tetraploid) 2	144.620
	CNS0095615	Golden flower (tetraploid) 3	130.117
CRA001975	CRR073297	Stem 1	127.128
	CRR073298	Stem 2	113.087
	CRR073299	Stem 3	135.059
	CRR073300	Leaf 1	116.895
	CRR073301	Leaf 2	129.151
	CRR073302	Leaf 3	116.295
	CRR073303	Juvenile bud 1	159.151
	CRR073304	Juvenile bud 2	142.325
	CRR073305	Juvenile bud 3	178.671
	CRR073306	Third green 1	88.913
	CRR073307	Third green 2	106.148
	CRR073308	Third green 3	84.630
	CRR073309	Second white 1	246.617
	CRR073310	Second white 2	119.953
	CRR073311	Second white 3	123.572
	CRR073312	Silver flowering 1	280.976
	CRR073313	Silver flowering 2	360.243
	CRR073314	Silver flowering 3	291.693
	CRR073315	Gold flowering 1	65.628
	CRR073316	Gold flowering 2	84.343
	CRR073317	Gold flowering 3	87.026
	CRR073318	Tawny withering 1	329.693
	CRR073319	Tawny withering 2	250.134
	CRR073320	Tawny withering 3	253.888