Gene detail

Detail information of GWHGAAZE033268

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273750.2	2.5669E-156	PREDICTED: putative cysteine-rich receptor-like protein kinase 43 [Vitis vinifera]
COG	YP_001958461.1	1E-17	hypothetical protein Aasi_1443
Swissprot	tr\|Q9M0G5\|CRK43_ARATH	1E-126	Putative cysteine-rich receptor-like protein kinase 43 (Precursor)
trEMBL	tr\|F6HUX8\|F6HUX8_VITVI	2E-156	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58496.1}
TAIR10	AT4G28670.1	1E-106	Protein kinase family protein with domain of unknown function (DUF26)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	3886718	3889804	+
GWHAAZE00000094	mRNA	3886718	3889804	+
GWHAAZE00000094	exon	3886718	3886901	+
GWHAAZE00000094	exon	3887726	3887863	+
GWHAAZE00000094	exon	3887956	3888077	+
GWHAAZE00000094	exon	3888405	3888615	+
GWHAAZE00000094	exon	3888784	3889018	+
GWHAAZE00000094	exon	3889208	3889265	+
GWHAAZE00000094	exon	3889541	3889804	+
GWHAAZE00000094	CDS	3886718	3886901	+
GWHAAZE00000094	CDS	3887726	3887863	+
GWHAAZE00000094	CDS	3887956	3888077	+
GWHAAZE00000094	CDS	3888405	3888615	+
GWHAAZE00000094	CDS	3888784	3889018	+
GWHAAZE00000094	CDS	3889208	3889265	+
GWHAAZE00000094	CDS	3889541	3889804	+

Transcript Sequence
>GWHTAAZE033307 ATGGCTAATTGCTGGAAGTCATTCGACACTGCTTCCTGTGGCCTCTGCCTCTCCAACGCCAGACACTTTGTCCTCAATTGTTTGCCTTCTGTCGAGGCCCGTGCCCTCACCGCCGGCTGCTATTTACGTTACTCTGACTATGACTTCGCCGAAAAATATGCTACTTCTTCTCTTTCTGTTGCTGCTATTACGAATGATACTGTTTTGTACATCTCGTGTGTTCTTGGCGCGATTGCGGTATGCTTTTTAGCCATTGTAGTAGGATATTTGGTTGGACAAGCCATAGTCAGAAGACGATTAAAGCGACAAAATGAACAAAAAGCCGAATACAAAGGTTTGGAGATAGACTCATTTCAATTCAAATACACAACACTAGAGAAAGCAACTCAAAACTTCAATGCAACCAACAAAATTGGTCAGGGCGGCTTCGGTGAAGTTTTCAAGGGAACATTGGGAGACGGTAGAGAAATCGCTATTAAACGGTTATATATAAGTGGGAAGCTCCGATTTTCAGAGATACAAAATGAAGTGGATATAATAGGCGAAGCCCAACACAAGAACTTGGCTCGATACCTAGGCTGTTGCTTTACCAATGAAGACAGCCTTCTGGTTTATGAATTTGTCCCAAACAGAAGTCTTGACCTTATTCTATTTGACCCAGAAAAGAAGGGAGAGTTAGGGTGGAAGAAAAGGCTTGAAATAATCAAAGGAACAGCGGAAGGCTTAGCATACCTTCACAAAGATTGTCAAGAGCCTATTATTCACAGAGACATCAAAGCAAGTAACATATTATTAGACCTCAAATACAGACCCAAAATCTCTGATTTCGGCCTAGCAATGATTCATTCAAATGATCAAAACCCGGCTAGCTCTGCCATTGCAGGCACATTCGGAGTGCAGAACAACAGTTTTCAGCCTGAAGATTCTCTCGACACGCTAGTTACAAGCACATGGAAGCACTTTCAGGGAAATAGGGTAGCAGAAATGATAGAGAAAAGCATGGACATTGAAGACATTGATGAAGTTAAAAGAGTGATTCAGATTGGATTATTGTGCACCCAAGAGTCACCTTCTGCACGTCCGACAATGACAAGCGTTATTGAAATGCTTACAGAACAGGAATCCAAATTACCGACTCCTTCCAAGCCTCCTTTTCTCGTCGATAATATTGATTTGTGTAAATATGAAAACACTGATCATGGCCTAAGATGA

Network for GWHGAAZE033268

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	133	290	5.50E-30

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.322
	SRR3591706	second leaf	0.167
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.477
	SRR3591709	Stem	0.684
	SRR3591710	White floral bud	25.234
	SRR3591711	White flower	2.147
	SRR3591712	Green floral bud	28.431
	SRR3591713	Yellow flower	0.658
SRP173429	SRR8316895	Juvenile bud stage	0.239
	SRR8316896	Juvenile bud stage	0.424
	SRR8316897	Juvenile bud stage	0.214
	SRR8316894	Third green stage	0.160
	SRR8316900	Third green stage	8.758
	SRR8316901	Third green stage	6.411
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.245
	SRR8316903	Complete white stage	0.169
	SRR8316902	Silver flowering stage	0.171
	SRR8316904	Silver flowering stage	0.248
	SRR8316905	Silver flowering stage	0.121
	SRR8316906	Gold flowering stage	0.014
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	5.649
	SRR6706287	Light intensity 50%	5.031
	SRR6706288	Light intensity 20%	5.287
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.291
	CNS0095593	Slightly white alabastrum(diploid) 2	2.321
	CNS0095594	Slightly white alabastrum(diploid) 3	3.380
	CNS0095595	Whole white alabastrum(diploid) 2	26.492
	CNS0095596	Whole white alabastrum(diploid) 3	26.920
	CNS0095597	Whole white alabastrum(diploid) 4	37.570
	CNS0095598	Silvery flower (diploied) 1	1.066
	CNS0095599	Silvery flower (diploied) 2	3.035
	CNS0095600	Silvery flower (diploied) 3	0.754
	CNS0095601	Golden flower (diploid) 1	1.309
	CNS0095602	Golden flower (diploid) 2	0.465
	CNS0095603	Golden flower (diploid) 3	0.965
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.754
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.927
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.520
	CNS0095607	Whole white alabastrum(tetraploid) 1	47.823
	CNS0095608	Whole white alabastrum(tetraploid) 2	59.350
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.021
	CNS0095610	Silvery flower (tetraploid) 1	0.636
	CNS0095611	Silvery flower (tetraploid) 2	2.315
	CNS0095612	Silvery flower (tetraploid) 3	7.233
	CNS0095613	Golden flower (tetraploid) 1	0.748
	CNS0095614	Golden flower (tetraploid) 2	0.315
	CNS0095615	Golden flower (tetraploid) 3	2.576
CRA001975	CRR073297	Stem 1	1.352
	CRR073298	Stem 2	0.702
	CRR073299	Stem 3	0.392
	CRR073300	Leaf 1	7.165
	CRR073301	Leaf 2	2.645
	CRR073302	Leaf 3	0.739
	CRR073303	Juvenile bud 1	7.126
	CRR073304	Juvenile bud 2	2.750
	CRR073305	Juvenile bud 3	0.446
	CRR073306	Third green 1	2.206
	CRR073307	Third green 2	1.935
	CRR073308	Third green 3	1.566
	CRR073309	Second white 1	0.335
	CRR073310	Second white 2	0.358
	CRR073311	Second white 3	0.345
	CRR073312	Silver flowering 1	1.986
	CRR073313	Silver flowering 2	1.185
	CRR073314	Silver flowering 3	0.975
	CRR073315	Gold flowering 1	1.088
	CRR073316	Gold flowering 2	0.557
	CRR073317	Gold flowering 3	0.428
	CRR073318	Tawny withering 1	2.002
	CRR073319	Tawny withering 2	1.704
	CRR073320	Tawny withering 3	2.929