Gene detail

Detail information of GWHGAAZE033269

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02086.1	0	unnamed protein product [Coffea canephora]
COG	YP_004696643.1	0.00000006	serine/threonine protein kinase
Swissprot	tr\|Q9FNE1\|CRK42_ARATH	2E-164	Cysteine-rich receptor-like protein kinase 42 (Precursor)
trEMBL	tr\|A0A068U0P1\|A0A068U0P1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02086.1}
TAIR10	AT5G40380.1	1E-125	cysteine-rich RLK (RECEPTOR-like protein kinase) 42

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	3891565	3895009	+
GWHAAZE00000094	mRNA	3891565	3895009	+
GWHAAZE00000094	exon	3891565	3892315	+
GWHAAZE00000094	exon	3892547	3892582	+
GWHAAZE00000094	exon	3893012	3893125	+
GWHAAZE00000094	exon	3893219	3893388	+
GWHAAZE00000094	exon	3893604	3893893	+
GWHAAZE00000094	exon	3894628	3895009	+
GWHAAZE00000094	CDS	3891565	3892315	+
GWHAAZE00000094	CDS	3892547	3892582	+
GWHAAZE00000094	CDS	3893012	3893125	+
GWHAAZE00000094	CDS	3893219	3893388	+
GWHAAZE00000094	CDS	3893604	3893893	+
GWHAAZE00000094	CDS	3894628	3895009	+

Transcript Sequence
>GWHTAAZE033308 ATGCATTTCTCAACCCAAAACCTCACATGTCTCATTTTCTTCTTCTTCTTCTTCATCAACCTCTACTCCCTCTCACACTCCGATCCCCGAATCTCCGAGGCGGGCCTCCTCTGTGGCACCTCAAGGCCTCCACCAAACACAACCTACATCCCCGCTTTTGTCAAAGAAATGGAAGTACTCTCTCAACAAGTCACTAGTAACCAGTGGGGTCACTACTCTCTCAACTCAACCCCACCCATTTACGGCCTTGCCCAGTGTTTCCAAGACCTTTCCCACACTGACTGCCTCCTCTGCTATGCCGCCAGCCGCACCAGACTACCCCGCTGCCTCCCTTATCTCTCCGCTCGCATTTTTCTTGATGGTTGCTTCCTTCGTTATGATAGCTATGATTTCTTCAATGAAACTATCGACCCGATTCGAGATACTGTGAATTGTAACAAAACAAGTGGGAATGAAGATACCCGGTTGGGATTTAGGGAGAACGTTGGGTATTTGATTGAGAATGTGACTCGGATTGCTGGGGAAAATGGAGGATTTGGGGTTATGGAATTTAAGGGAGTGTTTGGCTTGGCACAGTGTTGGATGAGTGTGAGTGCTGATGGCTGTAGATATTGTTTGGAGAAAGCTGGTGAAATGGTAAGAGGGTGTTTACCAAACAGGGAAGGGAGGGGATTGAATGCTGGTTGTTATTTGAGGTATTCGACTCATAAGTTCTTCAATGATGAGAGTCAGAAAATGAAGGGAAATTTTGTACTTCAATGGCAGTCAAATAGAACCTTTGCTTGCTGGGACTCCAGGACAGGGGCCACCGTAGCCTTTGCTCTGACTGCTGTAGCCTTCTTCATGCTCTCACTTTTTGCTACTTATGCAGCCTATGTAAGATGGTCAAATTTGAAAGAAGAGCGCACTACTCGTGGGCAAATCTCAAATTCATTTAACAAGTCAAGATTGAATTACAAGTATGAAACTCTAGAGAAGGCAACAAATTATTTCAATATATCAAGGAAAATAGGCCAAGGAGGTGCTGGTTCAGTATTCAAAGGGACTCTCCCAAACGGAACTAATATTGCTGCAAATCTTGCTACCGTGAGTTCATTCTCATGTGCATTTTTTACTTCTTCTGCAGATAAAAGTAGGATTCAAATTCTAAGCTGGAAGCAAAGGTTTGACATTATAGTTGGAACAGCCGAAGGGCTGGCACATCTTCACGGAGGGTGTCAAATAAGAATCATACACAGAGACATTAAGAGCAGCAATGTTCTTCTTGATGAGAATCTTGCTCCAAAAATTGCTGATTTTGGCCTTGCTCGGTGTTTTGGAGATGATAAGACTCATCTTAGCACTGGAATTGCAGGCACATTTGTGTGTAAATATATATTTGTGCCTCAGATTTGGAAGCTTTACAAAGCAGAGAAGTTGGCCGAATCAGTTGATCCTCGCCTGAAAGATGATTTTCCCATAAGAGAGGCATCTAATGTGCTTCAAATTGGACTCTTATGCACACAAGCATCAGCAGCATTAAGACCGTCCATGGATGAAGTGGTTCAGATGCTAACTCGCAGAGATTGTGAAATCCCAAGTCCTAATCAGCCTCCCTTTTTGAGTAACAGAATGAATGATACAACCAGCTCTGCTAGGTCCTCTAGTATAAACAGTTTAATATCGAGTGCGTTGACAAAAATTGATGCGTCCTCCACCTCCACAGAATCCTCTAGTGTGCAAAGTTCGACCAGCCATCGTTAA

Network for GWHGAAZE033269

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01657.18	Stress-antifung	46	129	2.20E-11
PF01657.18	Stress-antifung	145	235	9.10E-11
PF00069.26	Pkinase	383	444	1.80E-12

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.763
	SRR3591706	second leaf	12.404
	SRR3591707	mature leaf	9.686
	SRR3591708	Shoot apex	8.911
	SRR3591709	Stem	0.562
	SRR3591710	White floral bud	13.576
	SRR3591711	White flower	7.666
	SRR3591712	Green floral bud	12.089
	SRR3591713	Yellow flower	3.887
SRP173429	SRR8316895	Juvenile bud stage	9.522
	SRR8316896	Juvenile bud stage	6.908
	SRR8316897	Juvenile bud stage	5.104
	SRR8316894	Third green stage	3.230
	SRR8316900	Third green stage	16.374
	SRR8316901	Third green stage	12.040
	SRR8316898	Complete white stage	4.239
	SRR8316899	Complete white stage	6.872
	SRR8316903	Complete white stage	8.777
	SRR8316902	Silver flowering stage	2.062
	SRR8316904	Silver flowering stage	4.818
	SRR8316905	Silver flowering stage	2.153
	SRR8316906	Gold flowering stage	5.004
	SRR8316907	Gold flowering stage	4.685
	SRR8316908	Gold flowering stage	3.040
SRP132670	SRR6706286	Control	10.105
	SRR6706287	Light intensity 50%	12.857
	SRR6706288	Light intensity 20%	12.828
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.524
	CNS0095593	Slightly white alabastrum(diploid) 2	6.185
	CNS0095594	Slightly white alabastrum(diploid) 3	6.120
	CNS0095595	Whole white alabastrum(diploid) 2	6.037
	CNS0095596	Whole white alabastrum(diploid) 3	4.613
	CNS0095597	Whole white alabastrum(diploid) 4	6.736
	CNS0095598	Silvery flower (diploied) 1	11.814
	CNS0095599	Silvery flower (diploied) 2	28.667
	CNS0095600	Silvery flower (diploied) 3	8.719
	CNS0095601	Golden flower (diploid) 1	11.074
	CNS0095602	Golden flower (diploid) 2	11.638
	CNS0095603	Golden flower (diploid) 3	10.791
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.744
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.719
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.595
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.758
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.959
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.114
	CNS0095610	Silvery flower (tetraploid) 1	8.408
	CNS0095611	Silvery flower (tetraploid) 2	10.088
	CNS0095612	Silvery flower (tetraploid) 3	40.842
	CNS0095613	Golden flower (tetraploid) 1	2.677
	CNS0095614	Golden flower (tetraploid) 2	8.370
	CNS0095615	Golden flower (tetraploid) 3	8.356
CRA001975	CRR073297	Stem 1	11.738
	CRR073298	Stem 2	12.451
	CRR073299	Stem 3	7.712
	CRR073300	Leaf 1	17.878
	CRR073301	Leaf 2	18.870
	CRR073302	Leaf 3	13.446
	CRR073303	Juvenile bud 1	9.400
	CRR073304	Juvenile bud 2	11.085
	CRR073305	Juvenile bud 3	8.422
	CRR073306	Third green 1	19.657
	CRR073307	Third green 2	11.653
	CRR073308	Third green 3	15.410
	CRR073309	Second white 1	12.572
	CRR073310	Second white 2	12.186
	CRR073311	Second white 3	11.654
	CRR073312	Silver flowering 1	6.001
	CRR073313	Silver flowering 2	6.783
	CRR073314	Silver flowering 3	4.555
	CRR073315	Gold flowering 1	7.968
	CRR073316	Gold flowering 2	12.672
	CRR073317	Gold flowering 3	6.347
	CRR073318	Tawny withering 1	5.544
	CRR073319	Tawny withering 2	10.267
	CRR073320	Tawny withering 3	3.894