Gene detail

Detail information of GWHGAAZE033280

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008230540.1	4.5678E-161	PREDICTED: F-box/LRR-repeat protein 3 [Prunus mume]
Swissprot	tr\|Q9SKK0\|EBF1_ARATH	0.000001	EIN3-binding F-box protein 1
trEMBL	tr\|F6HUV5\|F6HUV5_VITVI	1E-158	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58473.1}
TAIR10	AT5G40470.1	1E-44	RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	4191368	4192971	-
GWHAAZE00000094	mRNA	4191368	4192971	-
GWHAAZE00000094	exon	4191368	4191448	-
GWHAAZE00000094	exon	4191527	4191589	-
GWHAAZE00000094	exon	4191673	4192971	-
GWHAAZE00000094	CDS	4191673	4192971	-
GWHAAZE00000094	CDS	4191527	4191589	-
GWHAAZE00000094	CDS	4191368	4191448	-

Transcript Sequence
>GWHTAAZE033319 ATGGATACTATCCTGTGCGACGAGCTCATACAAGCAATATTCAACCGCCTCCCTCCGCCGTCATCCTCCGCCGTCTCCCTCGTTTCCAAGCGGTGGCTACGACTCCTCCGCTCCTCCCAAACCTCCCTTTCTCTCCGTTTAGATATCCACCTTAATAAAAATCACACCCTTCACTTTCTCTCCTCTTTCCTCTCTCACTTCCCTCACCTCACTTCCCTCTCTCTCTCCACCTCCTCCGACATCTTCTCCGATCATCTCCTTTTGTCCGTCGCCTCTTCTTCTCTTAATCTCCGATTCCTCCGCTTCTTAACCGGCCCTGTCTCTCTATCCTCTTTACTTTCTCTCTCCACTTCATGTTCTCGCCTCTCTTCTCTCTCTATCTCTCTTTCTAGACCCCTCTCTTTCCGCTGGCTCCTTTATTTCCCCTCTCTTAAACACTTGTACATCGTTTGCACCACAGCAGAATTCAATTCCACAGATTTTAACTCCGAGGAATTCAATTCCGGTGAAAAATGTGTCAATGACGCTGAATTGGAACTAGAGAGCCTATCTTTATCAGGCATTAGATCGGGCGATTGCGGCCTTAATTGGCTATGGAGAAGCTGTAAAAAGCTCAACAAGCTGCAGCTACGAAACTGCGAGTCTGTTGGTGATAATCCTTCTTTTTCTTCATTCCTTAATTGCGTAAATGATCTTGAAGAAGTTGAATTAAGGACTTGTAGGCCTATTGTTGATGGTATTTTGCTGAAATTGGCTGAGAGTTGTACTACTTTGAATTCGCTTCTGATTTATGACGGTGGAAGTAAGGAGGGTTTACTTCAATTTATTACTCAAAGCCAGTGTAATTTGCAAAAGCTCGATTTACGATTACCTCTTGACCTAGATAACAATCATTTGTTGGCGCTAACTGAGAATTTCAGGAGATTATCCGGTCTTTGCCTACGGAGCTGTTGTCTTGTTACTAGTGAAGGACTCAACACTGTTGGGGTTGCCATGAATGGTAATCTTGAAGAGTTGGCCTTAATAAACTGCGATGCGATAGAAAGAGAAACCGGGTTGCTCACCACATTAGGACAGAATTTAAGGAGCTTGAGGAAATTAGACTTGTCTTATAATGATCTGTTGCTTGATAAAGAATTGATGTTAATGTTGCCTTCGTGTAATTATTTGCGTGAATTGAAGTTGAGGGGTTGTAGCCGATTGACTAATGCTGTCTTGGTCTCAATGTTCAAGAATTGTAAGCATTTGGAGAGTGTTGATATAATGGATTGTTGTGGGATTGAGATGGAGGCAGTTGAGGTTTATTTAGGGCTTCATTTGACTGCTGAATTGGGAGGACATGCACTGAAGAAAGCTACTTATTTTATGTTCCGAGTTAGGAGCAGTAGTTTCCTCTGCTCTGTTACTAAGACTTGTGTATTTGTGTCCCTGATACTGCAATGA

Network for GWHGAAZE033280

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	5	38	1.90E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.469
	SRR3591706	second leaf	3.067
	SRR3591707	mature leaf	3.811
	SRR3591708	Shoot apex	3.798
	SRR3591709	Stem	6.563
	SRR3591710	White floral bud	2.500
	SRR3591711	White flower	3.337
	SRR3591712	Green floral bud	2.323
	SRR3591713	Yellow flower	4.920
SRP173429	SRR8316895	Juvenile bud stage	3.255
	SRR8316896	Juvenile bud stage	2.899
	SRR8316897	Juvenile bud stage	0.743
	SRR8316894	Third green stage	0.850
	SRR8316900	Third green stage	2.297
	SRR8316901	Third green stage	1.798
	SRR8316898	Complete white stage	0.523
	SRR8316899	Complete white stage	2.357
	SRR8316903	Complete white stage	1.968
	SRR8316902	Silver flowering stage	0.648
	SRR8316904	Silver flowering stage	1.497
	SRR8316905	Silver flowering stage	0.460
	SRR8316906	Gold flowering stage	2.955
	SRR8316907	Gold flowering stage	1.333
	SRR8316908	Gold flowering stage	6.276
SRP132670	SRR6706286	Control	1.927
	SRR6706287	Light intensity 50%	1.931
	SRR6706288	Light intensity 20%	1.558
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.278
	CNS0095593	Slightly white alabastrum(diploid) 2	1.956
	CNS0095594	Slightly white alabastrum(diploid) 3	2.042
	CNS0095595	Whole white alabastrum(diploid) 2	2.617
	CNS0095596	Whole white alabastrum(diploid) 3	1.163
	CNS0095597	Whole white alabastrum(diploid) 4	1.413
	CNS0095598	Silvery flower (diploied) 1	2.871
	CNS0095599	Silvery flower (diploied) 2	2.506
	CNS0095600	Silvery flower (diploied) 3	3.065
	CNS0095601	Golden flower (diploid) 1	4.725
	CNS0095602	Golden flower (diploid) 2	5.502
	CNS0095603	Golden flower (diploid) 3	5.546
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.049
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.492
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.026
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.940
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.453
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.487
	CNS0095610	Silvery flower (tetraploid) 1	3.184
	CNS0095611	Silvery flower (tetraploid) 2	3.879
	CNS0095612	Silvery flower (tetraploid) 3	1.706
	CNS0095613	Golden flower (tetraploid) 1	3.181
	CNS0095614	Golden flower (tetraploid) 2	4.450
	CNS0095615	Golden flower (tetraploid) 3	2.709
CRA001975	CRR073297	Stem 1	6.255
	CRR073298	Stem 2	5.397
	CRR073299	Stem 3	5.867
	CRR073300	Leaf 1	3.891
	CRR073301	Leaf 2	4.642
	CRR073302	Leaf 3	3.220
	CRR073303	Juvenile bud 1	3.016
	CRR073304	Juvenile bud 2	2.784
	CRR073305	Juvenile bud 3	5.295
	CRR073306	Third green 1	0.652
	CRR073307	Third green 2	0.579
	CRR073308	Third green 3	0.730
	CRR073309	Second white 1	0.432
	CRR073310	Second white 2	0.640
	CRR073311	Second white 3	0.435
	CRR073312	Silver flowering 1	1.366
	CRR073313	Silver flowering 2	0.397
	CRR073314	Silver flowering 3	0.757
	CRR073315	Gold flowering 1	2.755
	CRR073316	Gold flowering 2	4.000
	CRR073317	Gold flowering 3	4.462
	CRR073318	Tawny withering 1	8.455
	CRR073319	Tawny withering 2	7.983
	CRR073320	Tawny withering 3	5.362