Gene detail

Detail information of GWHGAAZE033283

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI34863.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|F4KHD8\|GP210_ARATH	Nuclear pore complex protein GP210 {ECO:0000303\|PubMed:21189294} (Precursor)
trEMBL	tr\|M5XAL6\|M5XAL6_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ16095.1}
TAIR10	AT5G40480.1	embryo defective 3012

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	4230061	4239713	+
GWHAAZE00000094	mRNA	4230061	4239713	+
GWHAAZE00000094	exon	4230061	4230236	+
GWHAAZE00000094	exon	4232171	4232436	+
GWHAAZE00000094	exon	4234340	4239404	+
GWHAAZE00000094	exon	4239506	4239713	+
GWHAAZE00000094	CDS	4230061	4230236	+
GWHAAZE00000094	CDS	4232171	4232436	+
GWHAAZE00000094	CDS	4234340	4239404	+
GWHAAZE00000094	CDS	4239506	4239713	+

Transcript Sequence
>GWHTAAZE033322 ATGTTACGCTTGTTCGATTTGTTGGTGGTTGCTTGTGTTCTTCTTGTGGTGGAGACGCATGCGGTGTTGCATTCGGTCTCAGGTCCTCACATAGCGGATGTCAATATATTGTTACCTCCTAAGATGACCTACCCCGTGGAGTACAGGCTTCAGGGAAGTGATGGTTGCTTCAAATGGTCGTGGGATCATCATGATATTTTGGCTGTTCTGCCTGAGTACAATATAAGTAGTCATTGCTCAACGAGTGCCCACTTGAAGTCAATTGCCCCTTATAGTGGTCGAAAAGAGACTGCTGTTTATGCTACTGATGTACACACTGGGATGGTAATTCGTTGCAAAGTTTACATCGATAACTTCTCCAGGATCCAGATATTTCATAACTCTATCAAACTTGACCTAGATGGGCTTGCTACTCTTCGTGTCCGGGCTTTTGACAGTGAAGAAAATGTGTTTTCGTCATTAGTGGGCTTACAATTTATGTGGCATCTGATGCCTGAAACTGATGGATTGCCTCATCACCTTGTCCATGTTCCTTTGAAGGACTCTCCCCTGAGTGACTGTGGTGGCTTGTGTGGTGACCTAGATATCCAAATAAGGCTTGAGGATAGCGGTGTATATTCTGACCTATATGTAGTGAAAGGCACCGAAATTGGTCATGAGAATGTATCTGTTCATTTGCTCGAGCCCCTTTATGAGCACATGGCAGATAAGATTGTGTTGACAGTAGCAGAAGCCATGTCCCTTGATCCTCCCTCTCCTGTTTTTGTCCTTATTGGTGCCGTTGTCCCTTATACTCTAAAAGTAATTCGTGCAAATATTCCTCAAGTGGTGACTTTACCATCTCCCTTTCACCAATGGTCTGTTTTGAATTCTTCCGTTGCTCAGGTGGACAGAACAATGGGTAAAGCTTCTGCACTGAGCTTGGGGGTAACAATTATCACTGTTGAAGACACCAGGGTTCCTGGACACTTACAAATGTCATCTCTCCATGTTGTCCAGCCAGATACTTTATCTTTATACATGTTACCTCTGTCTCTTTCTGGTGATCCGGTAGAGGGACTAACACCTATCCCATCTGTCTCACGTTGGTATGTAGTTTCTGGCAGACAATATCTTATTAACGTGAAGGTTTTCTCACAAGGACCAGGAGTCCAAGAAATCTATATTACAGAAACTGATGATGTTAAGTTGCATGACCAGTCTGAATACTGGAATACTTTCTCCGTTTCTGATGGTATTGCTGCCAAACATGGGTGGTGGAATTGTAAAATCTTGAAAGCAACTTCATATGGACTGGGAAAACTTACAGCAACTTTAGCTTATAGTAGTGGACATGATGAAACAAAGGAGGTTCTTAAGATTGTGCAAGAAGTCATGGTCTGCAATGAAGTCAAGATTAGCAAGGACATAAGATATGAATATCAAAATATTCTCCTTCCCTGGGCCCCCGATGTCTACCAGGAGGTGGAGCTAAGGGCCACAGGAGGTTGTGCAATAGCAGTCAGTGATTATAAATGGTTTTCTTCTGATATGGCTTCTGTGTCTGTATCTGCTACTGGGATTGTCCAGGCAAAAAGGCCTGGCAAAGCTACTATCAAAGTGGTGTCCATCTTTGATTCATTCAATTATGATGAGGTGGTAATTGAAGTTATAATACCTACTTCTATGGTTATGCTGCCACACTTTCCTGTAGAGACTGTTGTGGGTTCACATCTTGCAGCTTCTGTGTCCTTGAAAGCATCAACTGGTGCCACCTTCTATAGTTGTGATGCTTTTAGTTCCTCCATAAGGTGGAAGACTGGGAATGACTCTTTTGTGGTTGTCAATGCAACAATGGAAACCATTCTCTCGGAAGGTCCTGTAATTTCTGAGGACTATAAAGCATTATACGGTCCTCCATGTGGATGGACCCGTGTATATGCTTCTAGCAGTGGCCGGACTATGCTACATGCAACGCTGACTAAAGAATATCAGTCCTTCGATCATTCTGTTGCCAGACCTCTCGTTTTAAAAGCATCCTCTCATATTGAAGCATTTTTACCACTCGTCGTGCATCAGACAGGAGATGGAAACCAATTTGGTGGTTACTGGTTTGATTTGGCTCACGCTGAAGCTCATAATCAGTTGGAACCTATAAATTCCTTGTATCTTGCCCCTGGTACACATATAGATGTCATACTTCGTGGTGGTCCAGAACCATGGGAAAAAGGCTTCAAGTTTATTATTGAACCTGTTGATATTATAAATGAAGAGCATACCAATCTTAAAGACGGAGTTCTTGTACATCAAATGTCTACTACTAGCTATGGTAGACCATTCAGAATTTTATGCCGAAAATTGGGAACCTTCAAACTGACTTTATTTGGTGATCACTTTCCTGCTCATGTTGAAGCATCGGTGACAATCTTGGTTACTTGTAACTTCCCTTCCTCAATTGTGGTAATAGCTGATGAAGCTGTTAATGCACCTGAAGCTATATGGGCGGCAACTCAAGCTGATCGCAGTTTAGGGCGAATTCGTGCCACGCCAATTACGGTGGCTAATGGACGCACTATTCGATTATCTGCAGTTGGCATTAGTGATTCTGGAAAGGCTTATGCAAACTCGTCTTCTCTCCATGTGGAGTGGGAAACTAGCAATTGTGATGGATTGGCGGATTGGGATGATGCCTCTACTCGGGGTCTAACCAAATCTAGTTGGGAGAGGTTTCTTGTTTTGCAAAATTCATCAGGATTGTGCATTGTTCGTGCTACCGTTGTTGGGTTCACTGGTACCATGAAGGGTCAGAATTCAGTTACACCATTCGAAAGTTCCGAAAGTGTTCTTACAGATGCTATACGTTTACAGCTTGTTTATACTTTAAGAGTCAGTCCAGAGTTCAACTTGTTATTTTTTTGCCCAGATGCCAAGTTAAACATCTCAATTACTGGAGGCAGTTGTTTTCTGGATTCTGTGGTGAATGATACTCAAATTGTAGAAGTTATTCAGTCCCCACCAGGATCACAGTGCTCGCAACTGGTGGTGTCTCCTAGAGGTTTGGGGACAGCGCTTGTGACAGTTTATGATATTGGGCTCACTCCTCGACTTGCTGCTTCCGCTGTGGTTCAAGTTGCAGATGTGGAATGGATTAAGATCACTTCTGGGGAAGAGATAAGCCTTATGGAAGGAAGTTCTCACTCTATTGGTCTTCTGGCTGGAGATATCGGTGGAAATACTTTTGACTCCTCTCAGTACATCTACATGAATATTCGTGTGCATATTGAGGACCATATAGTTGAGCTCGTAGACAATTTTGATAACCCAACTACTGTTGATGGATATGTTGAGGCACCAAATTTCGTTATCCGGGCTAGAAATCTTGGGTTTACAACTCTTTATCTCAGCGCTAGACAGCAATCTGGGCATGAGATATTGAGTCAACCTATTAGGGTAGAAGTCTATGCCCCACCAACCTTACATCCTGGAGTTATTTTCCTTGTACCAGGTGCCTCCTATGTGCTTACAGTTAAAGGAGGCCCCACGATTGGTTCATATGTCGAGTATGCGAGTATAAACAATGAAACTGCAGTGATTCACAAAAGTTTGGGAAGACTTTCTGCAATTGCACCGGGGAACACAACTGTAGTTGCCAAAATATACGGAAATGGAGATACAGTGATTTGTCAGGCATATGGCAGCGTTAAAGTTGGGGTCCCTTCTTCAGCGATACTGAAAGTACAGAGCGAGCAGCTTGCTGTTGGTTGTGAGATGCCAATATTTCCTTCTTTGTCTGAGGGTAATTTGTTTTCCTTTTATGAGCTCTGCAATAATTACAAGTGGAACATTGAGGATGAAGAGCTGTTGACTTTCCAAGGGGCAGAAATCCCATCTACTGGCTACTCTGAGCAGGACCTAGGGTTTATTCAAATGTTGTATGGAAGATCTGCTGGCAGGACAAAGGTTGCAGTTTCGTTTTCTTGTGATTTTAATTCCTCTGGTTCGTTTTCGCTGTCAAGGTTGTACAATGCATCACTGTCTTTGTTGGTGGTGCCCGATCTTCCCCTTGCTCTTGGAGCATCCATGACTTGGCTCCTACCTCCTTACTATACCACGTCAAATCTTTTGCCTTTATCTTCAAATTCGTACAGCAGCCAAGGGGATCCTCAAAGTCGGAAAGGAACTATTGCTTATTCTTTATTGAGAGAATGGGGTGGAAAGAATGAAGAGGCACAAAAAGATGCTGTATCCATTGATGGTGCTAGGATAAAAACGCGGGAGGGTACTAATCTTGCTTGCATTCAGGCAAAAGATAGGATAACTGGTAGAACTGAGGTTGCATCTTGTGTAAGGGTTGCTGAGATTGCTCAAGTTAGAATAATTGCCAAGGCTCTTCTTCCCTTTCACAAAATCAATCTTGCTGTTGGTGCTGAACTAGATGTTGGGATAAACTACCATGATGCTCTGGGAAATGCTTTCCTCGAGGCTTATAACGTTGTTCTCTTTGATGCTGAAACTAACTACGCTGATGTTGTCTCCATTAATGACTCGCTCAATGGTAATGGTAATATCCATCTCAAGGCAATGCACCATGGCAAAGCTCTGGTTCAAATATCTTTCAGTAGTGACCCCCAAAAGGCAGACTATTTTTTGATTTCGGTTGGTACTCATTTGTATCCTCAGAATCCAGTCCTTCACCTAGGAAGTTGTGTTAATTTCAGTATAGAAGGTATAAATGATCTAGTATTGGGCCAATGGTCCAGTGCCAATTCAAGTGTTGTGTCCATAGACTTGCTATCAGGGAAAGCTGAAGCCACTGGGGAAGGTACTACCCATGTTATCTTTGAGGGTACAAATTTGAAACTGCAGACGGCGGTGACTGTGTTAAAGGGGAGTATCGTGTCAGTTGATGCTCCGAGAGAGACCCTAACAAATACTCCTTTTCCAGCAAAAGGATATGCCTTCTCCGTGAAATTCAATGATGCTTATAACGATGGAGATGGAACAGTAATCCAGTATGATTGTGGGGTGGACCCACCTTTTGTCGGGTATGCAAAACCATGGAGGGATCTTGAAACTGGTAATTCATATTGCCTTTTCTTCCCTTACTCACCAGAGCACTTGGTACGTTCTATTCCCAAGTCCAAAAACATGAGACAAGATGTATCTGTTTCTATTAATGCTTCGGTGAGAGGACTCAACCATATTTCTGGATCCGCATCTGCTCTTTTTGTTGGGGGGTTTTCCGTTTTGGAAATGGGCAAGAATTTGTTGCAGTTAAATATGACCCCGCATTCAAACAAAAGCATCGTAACTATTGTTGGGAATACAGATGTTGAAGTTCACTGGTCAGAACGGGATCTACTAATGATCATGCCCGTCCATAGAGAAGATTACGGGATTGGAGGGCGTGTGGAGTACGAGTTCAGAGTTCTTGGAGCAAAGAGATTCAGGGATAAAGTTGTAATTACGCTTCCAGCTAACGGTCAGAGAATGGAAATTGATGTGAATTATGAACCTGGGGAGAGAGAACCTGATAGATCACAGCCAACCATTGCTCCTGCCACTCCAATTGCTGTTGGGCCTGTTACACCGGATCGTAGCAGCCCTACTGTTGTGAATGGACAGTCTCCTAGAACACCACAGCCTTTTGTTGAATATTTGAGGAGGACGATAGATGAAACTCCTCATTACAGGCGAGAACCAAGGAGGAGGGTTAATCCTCAGAATACTTTTTAG

Network for GWHGAAZE033283

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02368.19	Big_2	490	536	1.80E-05

Protein Sequence

>GWHPAAZE033304
MLRLFDLLVVACVLLVVETHAVLHSVSGPHIADVNILLPPKMTYPVEYRLQGSDGCFKWSWDHHDILAVLPEYNISSHCSTSAHLKSIAPYSGRKETAVYATDVHTGMVIRCKVYIDNFSRIQIFHNSIKLDLDGLATLRVRAFDSEENVFSSLVGLQFMWHLMPETDGLPHHLVHVPLKDSPLSDCGGLCGDLDIQIRLEDSGVYSDLYVVKGTEIGHENVSVHLLEPLYEHMADKIVLTVAEAMSLDPPSPVFVLIGAVVPYTLKVIRANIPQVVTLPSPFHQWSVLNSSVAQVDRTMGKASALSLGVTIITVEDTRVPGHLQMSSLHVVQPDTLSLYMLPLSLSGDPVEGLTPIPSVSRWYVVSGRQYLINVKVFSQGPGVQEIYITETDDVKLHDQSEYWNTFSVSDGIAAKHGWWNCKILKATSYGLGKLTATLAYSSGHDETKEVLKIVQEVMVCNEVKISKDIRYEYQNILLPWAPDVYQEVELRATGGCAIAVSDYKWFSSDMASVSVSATGIVQAKRPGKATIKVVSIFDSFNYDEVVIEVIIPTSMVMLPHFPVETVVGSHLAASVSLKASTGATFYSCDAFSSSIRWKTGNDSFVVVNATMETILSEGPVISEDYKALYGPPCGWTRVYASSSGRTMLHATLTKEYQSFDHSVARPLVLKASSHIEAFLPLVVHQTGDGNQFGGYWFDLAHAEAHNQLEPINSLYLAPGTHIDVILRGGPEPWEKGFKFIIEPVDIINEEHTNLKDGVLVHQMSTTSYGRPFRILCRKLGTFKLTLFGDHFPAHVEASVTILVTCNFPSSIVVIADEAVNAPEAIWAATQADRSLGRIRATPITVANGRTIRLSAVGISDSGKAYANSSSLHVEWETSNCDGLADWDDASTRGLTKSSWERFLVLQNSSGLCIVRATVVGFTGTMKGQNSVTPFESSESVLTDAIRLQLVYTLRVSPEFNLLFFCPDAKLNISITGGSCFLDSVVNDTQIVEVIQSPPGSQCSQLVVSPRGLGTALVTVYDIGLTPRLAASAVVQVADVEWIKITSGEEISLMEGSSHSIGLLAGDIGGNTFDSSQYIYMNIRVHIEDHIVELVDNFDNPTTVDGYVEAPNFVIRARNLGFTTLYLSARQQSGHEILSQPIRVEVYAPPTLHPGVIFLVPGASYVLTVKGGPTIGSYVEYASINNETAVIHKSLGRLSAIAPGNTTVVAKIYGNGDTVICQAYGSVKVGVPSSAILKVQSEQLAVGCEMPIFPSLSEGNLFSFYELCNNYKWNIEDEELLTFQGAEIPSTGYSEQDLGFIQMLYGRSAGRTKVAVSFSCDFNSSGSFSLSRLYNASLSLLVVPDLPLALGASMTWLLPPYYTTSNLLPLSSNSYSSQGDPQSRKGTIAYSLLREWGGKNEEAQKDAVSIDGARIKTREGTNLACIQAKDRITGRTEVASCVRVAEIAQVRIIAKALLPFHKINLAVGAELDVGINYHDALGNAFLEAYNVVLFDAETNYADVVSINDSLNGNGNIHLKAMHHGKALVQISFSSDPQKADYFLISVGTHLYPQNPVLHLGSCVNFSIEGINDLVLGQWSSANSSVVSIDLLSGKAEATGEGTTHVIFEGTNLKLQTAVTVLKGSIVSVDAPRETLTNTPFPAKGYAFSVKFNDAYNDGDGTVIQYDCGVDPPFVGYAKPWRDLETGNSYCLFFPYSPEHLVRSIPKSKNMRQDVSVSINASVRGLNHISGSASALFVGGFSVLEMGKNLLQLNMTPHSNKSIVTIVGNTDVEVHWSERDLLMIMPVHREDYGIGGRVEYEFRVLGAKRFRDKVVITLPANGQRMEIDVNYEPGEREPDRSQPTIAPATPIAVGPVTPDRSSPTVVNGQSPRTPQPFVEYLRRTIDETPHYRREPRRRVNPQNTF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14314	NUP210, GP210	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.907
	SRR3591706	second leaf	2.569
	SRR3591707	mature leaf	1.722
	SRR3591708	Shoot apex	7.903
	SRR3591709	Stem	3.386
	SRR3591710	White floral bud	3.213
	SRR3591711	White flower	5.298
	SRR3591712	Green floral bud	5.907
	SRR3591713	Yellow flower	1.581
SRP173429	SRR8316895	Juvenile bud stage	5.759
	SRR8316896	Juvenile bud stage	6.150
	SRR8316897	Juvenile bud stage	3.539
	SRR8316894	Third green stage	2.882
	SRR8316900	Third green stage	6.010
	SRR8316901	Third green stage	4.207
	SRR8316898	Complete white stage	0.217
	SRR8316899	Complete white stage	2.844
	SRR8316903	Complete white stage	1.097
	SRR8316902	Silver flowering stage	0.492
	SRR8316904	Silver flowering stage	1.215
	SRR8316905	Silver flowering stage	0.301
	SRR8316906	Gold flowering stage	1.617
	SRR8316907	Gold flowering stage	1.259
	SRR8316908	Gold flowering stage	2.131
SRP132670	SRR6706286	Control	3.010
	SRR6706287	Light intensity 50%	3.210
	SRR6706288	Light intensity 20%	3.581
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.765
	CNS0095593	Slightly white alabastrum(diploid) 2	5.889
	CNS0095594	Slightly white alabastrum(diploid) 3	4.717
	CNS0095595	Whole white alabastrum(diploid) 2	3.685
	CNS0095596	Whole white alabastrum(diploid) 3	3.706
	CNS0095597	Whole white alabastrum(diploid) 4	3.054
	CNS0095598	Silvery flower (diploied) 1	5.374
	CNS0095599	Silvery flower (diploied) 2	4.411
	CNS0095600	Silvery flower (diploied) 3	4.254
	CNS0095601	Golden flower (diploid) 1	4.111
	CNS0095602	Golden flower (diploid) 2	5.093
	CNS0095603	Golden flower (diploid) 3	4.969
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.796
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.369
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.063
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.543
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.349
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.142
	CNS0095610	Silvery flower (tetraploid) 1	3.524
	CNS0095611	Silvery flower (tetraploid) 2	3.796
	CNS0095612	Silvery flower (tetraploid) 3	2.121
	CNS0095613	Golden flower (tetraploid) 1	0.898
	CNS0095614	Golden flower (tetraploid) 2	2.974
	CNS0095615	Golden flower (tetraploid) 3	0.623
CRA001975	CRR073297	Stem 1	7.339
	CRR073298	Stem 2	6.936
	CRR073299	Stem 3	7.679
	CRR073300	Leaf 1	4.484
	CRR073301	Leaf 2	4.535
	CRR073302	Leaf 3	3.518
	CRR073303	Juvenile bud 1	3.414
	CRR073304	Juvenile bud 2	1.637
	CRR073305	Juvenile bud 3	4.673
	CRR073306	Third green 1	0.119
	CRR073307	Third green 2	0.150
	CRR073308	Third green 3	0.472
	CRR073309	Second white 1	0.808
	CRR073310	Second white 2	0.722
	CRR073311	Second white 3	0.712
	CRR073312	Silver flowering 1	0.555
	CRR073313	Silver flowering 2	1.343
	CRR073314	Silver flowering 3	0.306
	CRR073315	Gold flowering 1	2.724
	CRR073316	Gold flowering 2	4.016
	CRR073317	Gold flowering 3	3.695
	CRR073318	Tawny withering 1	4.847
	CRR073319	Tawny withering 2	3.716
	CRR073320	Tawny withering 3	5.107