Gene detail

Detail information of GWHGAAZE033290

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009799109.1	0	PREDICTED: uncharacterized protein LOC104245226 isoform X1 [Nicotiana sylvestris]
COG	YP_004985011.1	2E-10	glycosyl transferase group 1 (modular protein), partial
trEMBL	tr\|K4BDD9\|K4BDD9_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g093430.2.1}
TAIR10	AT3G27540.1	3E-177	beta-1,4-N-acetylglucosaminyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	4287377	4288453	-
GWHAAZE00000094	mRNA	4287377	4288453	-
GWHAAZE00000094	exon	4287377	4288453	-
GWHAAZE00000094	CDS	4287377	4288453	-

Transcript Sequence
>GWHTAAZE033329 ATGTCGAGACTAAGATGTATGCTTCAAGGGATTGATTTAAAGACCTTTATATTCTTGTTTGTGATTGTGCCAACAGGCATAGTTGGGATTTATGTTCATGGTCAGAAGGTCACCTACTTCCTAAGGCCCCTCTGGCAATCTCCTCCAAAGCCATTCATTGACATACCACACTATTATCATGAGAACGTCTCGATGGAGACTCTTTGTAGAGTTCATGGTTGGGGAATACGCGAATATCCTAGACGCGTATTTGATGCTGTTTTATTTAGTAACGAAGTAGACATGCTCACAATCCGATGGAACGAATTATACCCTTACATTACACAATTCGTTCTTCTTGAATCGAATTCAACATTTACTGGTTTGTCCAAGCCCCACTTCTTTGCAATCAATAGGAACCAGTTCAAATTTGTTGAGCCTCGGCTAACTTATGGGACAATTGGTGGAAGGTTTAGGAAAGGTGAAAACCCATTTGTCGAGGAGGCTTACCAGAGAGTAGCCCTCGACCAGCTTCTTAGAATAGCTGGTATAGAAGATGAGGATTTACTGATCATGTCCGATGTTGATGAAATCCCTAGTGGCCACACGATTGATCTCTTGAGGTGGTGTGATGAAACACCTCCAGTTATTCACCTTCATTTGAGGAACTATCTGTATTCGTTTGAGTTTCATATCGATCACAAAAGCTGGAGAGCTTCGGTCCACAAGTACCAAAGGGGTAAAACTAGGTACGTGCATTTTCGCCAGACGGACTTGCTTTTAGCAGACTCGGGTTGGCATTGTAGCTTTTGCTTTCGCCATATAAGTGACTTTGTGTTTAAGATGAAAGCTTATAGCCACACTGACCGAGTGAGGTTCTCTCATTACTTGAATCCGCAAAGAATTCAAGACGTAATTTGCAATGGGACTGATCTATACGACATGCTTCCCGAGGAGTACACGTTTAGGGACATCATTGGTAGAATGGGAGCCATCCCTCATTCTTACTCTGCTGTTCATTTGCCTGCGTATTTATTGAACAATGCTGACAAGTACAGATATCTTTTGCCAGGGAACTGCAAAAGAGAAGATGGCTGA

Network for GWHGAAZE033290

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04724.14	Glyco_transf_17	12	356	7.40E-181

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00737	MGAT3	Metabolic pathways	map01100
K00737	MGAT3	N-Glycan biosynthesis	map00510

Gene Ontology

GO term	Ontology	Name
GO:0006487	biological_process	protein N-linked glycosylation
GO:0016020	cellular_component	membrane
GO:0003830	molecular_function	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.671
	SRR3591706	second leaf	5.183
	SRR3591707	mature leaf	14.120
	SRR3591708	Shoot apex	2.135
	SRR3591709	Stem	1.326
	SRR3591710	White floral bud	17.983
	SRR3591711	White flower	7.521
	SRR3591712	Green floral bud	7.542
	SRR3591713	Yellow flower	6.682
SRP173429	SRR8316895	Juvenile bud stage	2.709
	SRR8316896	Juvenile bud stage	2.772
	SRR8316897	Juvenile bud stage	1.638
	SRR8316894	Third green stage	1.723
	SRR8316900	Third green stage	7.003
	SRR8316901	Third green stage	6.713
	SRR8316898	Complete white stage	2.667
	SRR8316899	Complete white stage	7.546
	SRR8316903	Complete white stage	6.119
	SRR8316902	Silver flowering stage	2.695
	SRR8316904	Silver flowering stage	5.579
	SRR8316905	Silver flowering stage	0.959
	SRR8316906	Gold flowering stage	6.217
	SRR8316907	Gold flowering stage	2.855
	SRR8316908	Gold flowering stage	4.962
SRP132670	SRR6706286	Control	2.629
	SRR6706287	Light intensity 50%	3.964
	SRR6706288	Light intensity 20%	3.593
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.323
	CNS0095593	Slightly white alabastrum(diploid) 2	4.168
	CNS0095594	Slightly white alabastrum(diploid) 3	5.218
	CNS0095595	Whole white alabastrum(diploid) 2	7.727
	CNS0095596	Whole white alabastrum(diploid) 3	10.180
	CNS0095597	Whole white alabastrum(diploid) 4	9.083
	CNS0095598	Silvery flower (diploied) 1	0.962
	CNS0095599	Silvery flower (diploied) 2	1.690
	CNS0095600	Silvery flower (diploied) 3	4.193
	CNS0095601	Golden flower (diploid) 1	1.633
	CNS0095602	Golden flower (diploid) 2	4.730
	CNS0095603	Golden flower (diploid) 3	4.180
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.581
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.638
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.568
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.010
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.552
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.248
	CNS0095610	Silvery flower (tetraploid) 1	11.174
	CNS0095611	Silvery flower (tetraploid) 2	7.212
	CNS0095612	Silvery flower (tetraploid) 3	4.649
	CNS0095613	Golden flower (tetraploid) 1	1.702
	CNS0095614	Golden flower (tetraploid) 2	11.766
	CNS0095615	Golden flower (tetraploid) 3	6.083
CRA001975	CRR073297	Stem 1	4.190
	CRR073298	Stem 2	3.375
	CRR073299	Stem 3	2.434
	CRR073300	Leaf 1	5.349
	CRR073301	Leaf 2	6.009
	CRR073302	Leaf 3	3.525
	CRR073303	Juvenile bud 1	4.835
	CRR073304	Juvenile bud 2	5.050
	CRR073305	Juvenile bud 3	2.501
	CRR073306	Third green 1	6.705
	CRR073307	Third green 2	6.605
	CRR073308	Third green 3	5.502
	CRR073309	Second white 1	2.977
	CRR073310	Second white 2	3.253
	CRR073311	Second white 3	3.428
	CRR073312	Silver flowering 1	5.272
	CRR073313	Silver flowering 2	6.093
	CRR073314	Silver flowering 3	6.516
	CRR073315	Gold flowering 1	8.469
	CRR073316	Gold flowering 2	7.691
	CRR073317	Gold flowering 3	9.089
	CRR073318	Tawny withering 1	3.692
	CRR073319	Tawny withering 2	3.921
	CRR073320	Tawny withering 3	3.180