Gene detail

Detail information of GWHGAAZE033292

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011097379.1	0	PREDICTED: glucuronokinase 1-like [Sesamum indicum]
COG	YP_007320045.1	9E-90	GHMP kinase
Swissprot	tr\|Q93ZC9\|GLAK1_ARATH	0	Glucuronokinase 1
trEMBL	tr\|A0A067LPF1\|A0A067LPF1_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP46399.1}
TAIR10	AT3G01640.1	2E-167	glucuronokinase G

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	4303566	4306916	+
GWHAAZE00000094	mRNA	4303566	4306916	+
GWHAAZE00000094	exon	4303566	4303781	+
GWHAAZE00000094	exon	4304980	4305129	+
GWHAAZE00000094	exon	4305384	4305572	+
GWHAAZE00000094	exon	4305656	4305772	+
GWHAAZE00000094	exon	4306228	4306388	+
GWHAAZE00000094	exon	4306670	4306916	+
GWHAAZE00000094	CDS	4303566	4303781	+
GWHAAZE00000094	CDS	4304980	4305129	+
GWHAAZE00000094	CDS	4305384	4305572	+
GWHAAZE00000094	CDS	4305656	4305772	+
GWHAAZE00000094	CDS	4306228	4306388	+
GWHAAZE00000094	CDS	4306670	4306916	+

Transcript Sequence
>GWHTAAZE033331 ATGGCGAATGATGAACAGAAAACAGGGACGATTGAGCACAAGGCATACGCGAGGATTGGTTTATTAGGAAACCCTAGCGATGTATATTACGGTAAAACGATTTCTCTCAGTCTGGCCAATTTCTGGGCCTCTGTGAAGCTCCAACCTTCTGCTGATCTCGTCATCGTTCCTCATCCCACTCACGATCTCGTCCAGTTCAAATCTCTCACCCACCTGGTGAATCGGTTGCAGAATGAAGGTTACTATGGAGGGGTGCGTTTGCTTATGGCTGTATGTAATGTTTTTACGAATCATTGCAAAGATAACAACATTGATCTTCATGAAAGAAATTTTACTCTATCGTATGAGACTAATATTCCTCGTCAGACAGGGCTCTCAGGTTCTAGCGCAATTGTATGTGCTGCTCTTAGTTGCCTCCTTGACTTTTACAATGTCAGGCATCTAATTAAGGTAGAGGTCAGGCCTAACATTGTCCTTAGCGCAGAGAAGGAACTTGGAATTGTTGCTGGTCTACAGGACAGGGTAGCACAGGTTTATGGGGGCCTCGTATACATGGATTTTAGCAAGAAATACATGGATGAATTGGGGCATGGAATATATACACACATGGATGTCAGTCTTCTCCCACCTCTCCACCTCATCTATGCTGAGAACCCAAGTGATTCTGGAAAGGTACACAGTACAGTTCGACAAAGGTGGTTAGCTGGAGATGAATTTATAATATCCACAATGGAGGAAGTTGCCAATATAGCTTTAGAAGGAAAGACTGCATTGACTGAAAAGGACTACACCAAACTTGCAACCCTCATTAACCATAATTTTGACCTGCGGAGGGCAATGTTTGGAGATGAGGCTCTGGGTGCCCTAAACATAAAGATGATAGAAGTGGCCAGGAAGGTGGGGGCTGCATCAAAATTTACCGGTAGTGGAGGTGCTGTGGTTGTCTACTGCCCCGATGGACCCTCACAAGTACAACTTCTAGAGGATGCCTGTAAGCAAGCTGGTTTTATCCTTGCACCAGTTAGTGTTGTTCCCTCCCGTCTAAATGAGATCAATATCAAAACCATGTCTCCACAATAA

Network for GWHGAAZE033292

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00288.27	GHMP_kinases_N	113	181	2.60E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16190	GLCAK	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Ascorbate and aldarate metabolism	map00053
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.251
	SRR3591706	second leaf	5.528
	SRR3591707	mature leaf	4.101
	SRR3591708	Shoot apex	25.047
	SRR3591709	Stem	17.088
	SRR3591710	White floral bud	15.345
	SRR3591711	White flower	16.824
	SRR3591712	Green floral bud	24.268
	SRR3591713	Yellow flower	44.842
SRP173429	SRR8316895	Juvenile bud stage	18.706
	SRR8316896	Juvenile bud stage	36.000
	SRR8316897	Juvenile bud stage	13.497
	SRR8316894	Third green stage	11.453
	SRR8316900	Third green stage	40.808
	SRR8316901	Third green stage	41.736
	SRR8316898	Complete white stage	18.363
	SRR8316899	Complete white stage	31.256
	SRR8316903	Complete white stage	20.863
	SRR8316902	Silver flowering stage	12.578
	SRR8316904	Silver flowering stage	15.246
	SRR8316905	Silver flowering stage	7.027
	SRR8316906	Gold flowering stage	23.627
	SRR8316907	Gold flowering stage	19.447
	SRR8316908	Gold flowering stage	18.960
SRP132670	SRR6706286	Control	30.558
	SRR6706287	Light intensity 50%	27.830
	SRR6706288	Light intensity 20%	30.591
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.604
	CNS0095593	Slightly white alabastrum(diploid) 2	31.914
	CNS0095594	Slightly white alabastrum(diploid) 3	42.671
	CNS0095595	Whole white alabastrum(diploid) 2	33.472
	CNS0095596	Whole white alabastrum(diploid) 3	38.465
	CNS0095597	Whole white alabastrum(diploid) 4	34.103
	CNS0095598	Silvery flower (diploied) 1	21.394
	CNS0095599	Silvery flower (diploied) 2	20.095
	CNS0095600	Silvery flower (diploied) 3	26.235
	CNS0095601	Golden flower (diploid) 1	27.018
	CNS0095602	Golden flower (diploid) 2	33.907
	CNS0095603	Golden flower (diploid) 3	30.674
	CNS0095604	Slightly white alabastrum(tetraploid) 1	45.589
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.646
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.168
	CNS0095607	Whole white alabastrum(tetraploid) 1	38.376
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.484
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.427
	CNS0095610	Silvery flower (tetraploid) 1	44.361
	CNS0095611	Silvery flower (tetraploid) 2	44.541
	CNS0095612	Silvery flower (tetraploid) 3	27.758
	CNS0095613	Golden flower (tetraploid) 1	43.597
	CNS0095614	Golden flower (tetraploid) 2	62.564
	CNS0095615	Golden flower (tetraploid) 3	104.252
CRA001975	CRR073297	Stem 1	24.133
	CRR073298	Stem 2	23.269
	CRR073299	Stem 3	24.774
	CRR073300	Leaf 1	28.094
	CRR073301	Leaf 2	25.594
	CRR073302	Leaf 3	23.728
	CRR073303	Juvenile bud 1	27.213
	CRR073304	Juvenile bud 2	28.887
	CRR073305	Juvenile bud 3	26.263
	CRR073306	Third green 1	14.887
	CRR073307	Third green 2	13.239
	CRR073308	Third green 3	13.120
	CRR073309	Second white 1	14.389
	CRR073310	Second white 2	9.420
	CRR073311	Second white 3	9.782
	CRR073312	Silver flowering 1	9.799
	CRR073313	Silver flowering 2	11.866
	CRR073314	Silver flowering 3	4.820
	CRR073315	Gold flowering 1	7.967
	CRR073316	Gold flowering 2	10.204
	CRR073317	Gold flowering 3	7.128
	CRR073318	Tawny withering 1	14.568
	CRR073319	Tawny withering 2	7.422
	CRR073320	Tawny withering 3	17.369